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move debug to help step
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ktmeaton committed Oct 13, 2020
1 parent b546ac7 commit 32f8e25
Showing 1 changed file with 2 additions and 6 deletions.
8 changes: 2 additions & 6 deletions .github/workflows/install.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -33,9 +33,6 @@ jobs:
fail-fast: false
steps:
#------------------------------------------------------------------------#
- name: setup debug session
uses: csexton/debugger-action@master
#------------------------------------------------------------------------#
# Checkout Repository
- name: checkout repo
uses: actions/checkout@v2
Expand All @@ -53,6 +50,7 @@ jobs:
#------------------------------------------------------------------------#
# run help
- name: run help
uses: csexton/debugger-action@master
shell: bash -l {0}
run: |
conda activate plague-phylogeography;
Expand All @@ -65,9 +63,6 @@ jobs:
fail-fast: false
steps:
#------------------------------------------------------------------------#
- name: setup debug session
uses: csexton/debugger-action@master
#------------------------------------------------------------------------#
# Checkout Repository
- name: checkout repo
uses: actions/checkout@v2
Expand All @@ -84,6 +79,7 @@ jobs:
#------------------------------------------------------------------------#
# run help
- name: run help
uses: csexton/debugger-action@master
run: |
singularity exec plague-phylogeography_dev.sif snakemake --use-singularity --singularity-prefix ${SINGULARITY_SNK_PREFIX} --profile profiles/gh-actions help;
#------------------------------------------------------------------------#
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