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tackled some high and low priorities
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ktmeaton committed Sep 2, 2020
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7 changes: 6 additions & 1 deletion CHANGELOG.md
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## [Development]

### High Priority

- Some processes don't use resume if a new outdir is supplied.

### Medium Priority

- Add exact-repeats and tandem repeats detection
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- Rewrite shell scripts in python?
- Github Actions: Convert local to remote narratives
- Make the snippy multi filter locus splitting be generic (not plague specific)
- Breakup snippy step in pipeline to snippy - snp stats - snpeff

## [v0.1.4] - 2020-0824 - SRA and Local Data
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- update ncbimeta dependency from 0.6.5 to 0.6.6
- restrict biopython to =1.74 because of string/byte encoding bugs.
- Fixed the fail to publish issue with NCBImeta db
- Switched reference genome from RefSeq to Genbank
- Make the snippy multi filter locus splitting be generic (not plague specific)

### Removed

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