Skip to content

Commit

Permalink
lint format blanks around headings and lists
Browse files Browse the repository at this point in the history
  • Loading branch information
ktmeaton committed May 12, 2020
1 parent 885b1d7 commit 4a2de62
Showing 1 changed file with 10 additions and 0 deletions.
10 changes: 10 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -1,10 +1,12 @@
# Changelog

All notable changes to this project will be documented in this file.

The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
and this project "attempts" to adhere to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).

## [Development]

- Rewrite shell scripts in python?
- Overabundance of files in database update and snippy_filtering
- Deal with the fail to publish issue with NCBImeta db
Expand All @@ -21,29 +23,35 @@ and this project "attempts" to adhere to [Semantic Versioning](http://semver.org
## [v0.1.2] - 2020-05-07 - Metadata

### Added

- scripts/sqlite_EAGER_tsv.py scripts/sqlite_NextStrain_tsv.py scripts/geocode_NextStrain.py

### Changed

- git update-index --add --chmod=+x scripts/geocode_NextStrain.py scripts/sqlite_EAGER_tsv.py scripts/sqlite_NextStrain_tsv.py

## [v0.1.1] - 2020-04-29 - Narratives and ReadtheDocs

### Added

- ModelFinder for model selection, automatic integration with IQTREE
- scripts/fasta_split_locus.sh
- EAGER processing begins (eager/)
- NextStrain Datasets and Narratives (auspice/ and narratives/)

### Removed

- Modeltest-NG process entirely removed

### Changed

- At this point, the pipeline is fully resumable.
- git update-index --add --chmod=+x scripts/fasta_split_replicon.sh

## [v0.1.0] - 2020-04-14

### Added

- Repository: README.md, CHANGELOG.md, .gitignore
- Configuration: ncbimeta.yaml, multiqc_config.yaml
- Annotation: annot_biosample.txt
Expand All @@ -59,8 +67,10 @@ and this project "attempts" to adhere to [Semantic Versioning](http://semver.org
- Steps - Statistics: QualiMap, MultiQC

### Changed

- 2020-02-21 Used git filter-branch to purge ncbimeta.yaml from history. API key accidentally revealed. Re-added and now not tracked.
- 2020-02-28 Redo ncbimeta.yaml history purge:

```
cp ncbimeta.yaml $HOME/ncbimeta.yaml.bak
```
Expand Down

0 comments on commit 4a2de62

Please sign in to comment.