plot tips

ktmeaton · Jan 16, 2021 · 675862a · 675862a
1 parent 500eab3
commit 675862a
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Showing 5 changed files with 28 additions and 314 deletions.
diff --git a/docs/results/latest/mugration/mug_tree_branch_major.jpg b/docs/results/latest/mugration/mug_tree_branch_major.jpg
diff --git a/docs/results/latest/mugration/mug_tree_branch_minor.jpg b/docs/results/latest/mugration/mug_tree_branch_minor.jpg
diff --git a/workflow/notebooks/SAMEA3713711.homo.txt b/workflow/notebooks/SAMEA3713711.homo.txt
diff --git a/workflow/notebooks/branch_support.py.ipynb b/workflow/notebooks/branch_support.py.ipynb
@@ -215,8 +215,10 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
-   "metadata": {},
+   "execution_count": 15,
+   "metadata": {
+    "scrolled": true
+   },
    "outputs": [
     {
      "data": {
@@ -306,6 +308,9 @@
     "ax3.set_ylim(0 - y_buffer,len(tree.get_terminals()) + y_buffer)\n",
     "ax3.set_title(\"Joint Branch Supports Across the Tree\")\n",
     "\n",
+    "# Plot tips\n",
+    "#ax3.scatter(data=tree_df, x=\"coord_x\", y=\"coord_y\", s=0.5, c=\"grey\")\n",
+    "\n",
     "# -------------------------------\n",
     "# Figure title\n",
     "fig.suptitle(\"Maximum Likelihood Phylogeny Branch Supports\")\n",

diff --git a/workflow/notebooks/mugration.py.ipynb b/workflow/notebooks/mugration.py.ipynb