initialize bash shell for conda activate

ktmeaton · Sep 7, 2021 · 78a1bc7 · 78a1bc7
1 parent 11e2697
commit 78a1bc7
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/.github/workflows/install.yaml b/.github/workflows/install.yaml
@@ -51,6 +51,7 @@ jobs:
         run: mamba env create -f workflow/envs/merge/environment.yaml
       # Install lsd2
       - name: install lsd2
+        shell: bash -l {0}
         run: |
           wget https://github.com/tothuhien/lsd2/releases/download/v1.9.9/lsd2_unix ;
           mv lsd2_unix /home/runner/miniconda/envs/plague-phylogeography/bin/lsd2 ;