put jupyter notebook output into results

ktmeaton · Feb 25, 2021 · 8cdab57 · 8cdab57
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diff --git a/auspice/plague-phylogeography_parse-tree.json b/auspice/plague-phylogeography_parse-tree.json
diff --git a/docs/notes/Notes_Development.md b/docs/notes/Notes_Development.md
@@ -18,7 +18,8 @@
     - 2_clock_model
     - 3_mugration_model
 
+1. Put jupyter notebook output into results.
+
 ## TO DO
 
 1. Think about snippy_dir in rule ```eager```...
-1. Timetree alters the topology, perhaps run that first?
diff --git a/results/parse_tree/parse_tree.df.obj b/results/parse_tree/parse_tree.df.obj
diff --git a/results/parse_tree/parse_tree.nexus b/results/parse_tree/parse_tree.nexus
diff --git a/results/parse_tree/parse_tree.nwk b/results/parse_tree/parse_tree.nwk
diff --git a/results/parse_tree/parse_tree.phylo.obj b/results/parse_tree/parse_tree.phylo.obj
diff --git a/results/parse_tree/parse_tree.tsv b/results/parse_tree/parse_tree.tsv
diff --git a/results/parse_tree/parse_tree.xml b/results/parse_tree/parse_tree.xml