remove mugration from all targets

ktmeaton · Apr 30, 2021 · 8ded941 · 8ded941
1 parent 821de4d
commit 8ded941
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -116,12 +116,12 @@ rule all:
         # Alignment
         snippy_multi_filter_prune_all_input,
         # Phylo
-        #iqtree_all_input,
-        #iqtree_filter_all_input,
+        iqtree_all_input,
+        iqtree_filter_all_input,
         # Post-Phylo (no lsd2 for gh actions)
         #lsd_all_input,
-        mugration_all_input,
-        mugration_prune_all_input,
+        #mugration_all_input,
+        #mugration_prune_all_input,
         # Plot
         plot_missing_data_all_input,
         plot_snp_matrix_all_input,