qualimap cross-ref and channels

ktmeaton · May 7, 2020 · 8f12195 · 8f12195
1 parent 234204a
commit 8f12195
Showing 1 changed file with 3 additions and 7 deletions.
diff --git a/docs/process/process_stats.rst b/docs/process/process_stats.rst
@@ -39,18 +39,14 @@ Generate a MultiQC report from pipeline analyses.
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 Input                                     Type                        Description
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-ch_snippy_pairwise_qualimap_multiqc       misc                        All default qualimap output from process qualimap_snippy_pairwise.
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-
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-Output                                    Type                        Description
-========================================= =========================== ===========================
-multiqc_report.html                       html                        MultiQC report file.
+ch_snippy_pairwise_qualimap_multiqc       misc                        All default qualimap output from process :ref:`qualimap_snippy_pairwise<QualiMap Snippy Pairwise>`.
+ch_snippy_csv_snpEff_multiqc              csv                         Variant summary statistics from process :ref:`snippy_pairwise<Snippy Pairwise>`
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 Publish                                     Type                        Description
 =========================================== =========================== ===========================
+\*multiqc_report.html                       html                        MultiQC report file.
 \*_data                                     misc                        All default MultiQC data files.
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