add conda cache restore to assembly pipeline

ktmeaton · Jul 24, 2020 · 9b9aaff · 9b9aaff
1 parent 280abf5
commit 9b9aaff
Showing 1 changed file with 12 additions and 6 deletions.
diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -25,11 +25,6 @@ jobs:
   #----------------------------------------------------------------------------#
   install :
     runs-on: ubuntu-latest
-    # Map a step output to a job output
-    outputs:
-      plague-phylogeography-cache-hit: ${{ steps.plague-phylogeography-env-cache.outputs.cache-hit }}
-      eager-cache-hit: ${{ steps.eager-env-cache.outputs.cache-hit }}
-      nextstrain-cache-hit: ${{ steps.nextstrain-env-cache.outputs.cache-hit }}
     steps:
       # Install nextflow
       - name: install nextflow
@@ -159,15 +154,26 @@ jobs:
     needs: install
     runs-on: ubuntu-latest
     steps:
+      #------------------------------------------------------------------------#
+      #                      Restore (cache) conda environments                #
+      #------------------------------------------------------------------------#
       # Setup conda
       - name: setup conda
         uses: goanpeca/setup-miniconda@v1
+      # Restore the plague-phylogeography conda env
+      - name: cache plague-phylogeography env
+        uses: actions/cache@v2
+        id: plague-phylogeography-env-cache
+        with:
+          path: |
+            /home/runner/miniconda/envs/plague-phylogeography-0.1.4dev
+          key: plague-phylogeography-env-cache-${{ runner.os }}-test2-${{ hashFiles('./ktmeaton-plague-phylogeography.yaml') }}
       #------------------------------------------------------------------------#
       #                             Test Pipeline                              #
       #------------------------------------------------------------------------#
       # Run Assembly Pipeline (only if cache restored)
       - name: assembly pipeline
-        if:  needs.install.outputs.plague-phylogeography-cache-hit == 'true'
+        if:  steps.plague-phylogeography-env-cache.outputs.cache-hit == 'true'
         shell: bash -l {0}
         run: |
           conda activate ${PHYLO_CONDA_ENV}