slack:0.1, blm: joint, tc:def, time_marginal:def

ktmeaton · Feb 25, 2021 · c33bd64 · c33bd64
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diff --git a/auspice/plague-phylogeography_clock-model.json b/auspice/plague-phylogeography_clock-model.json
diff --git a/results/clock_model/clock_model.nexus b/results/clock_model/clock_model.nexus
diff --git a/results/clock_model/clock_model.nwk b/results/clock_model/clock_model.nwk
diff --git a/results/clock_model/clock_model.tsv b/results/clock_model/clock_model.tsv
diff --git a/results/clock_model/clock_model.xml b/results/clock_model/clock_model.xml
diff --git a/results/clock_model/clock_model_augur.json b/results/clock_model/clock_model_augur.json
diff --git a/results/clock_model/clock_model_auspice.json b/results/clock_model/clock_model_auspice.json
diff --git a/results/clock_model/clock_model_rate-variation.svg b/results/clock_model/clock_model_rate-variation.svg
diff --git a/results/clock_model/clock_model_rtt.svg b/results/clock_model/clock_model_rtt.svg
diff --git a/results/clock_model/clock_model_timetree.svg b/results/clock_model/clock_model_timetree.svg
diff --git a/workflow/notebooks/2_clock_model.py.ipynb b/workflow/notebooks/2_clock_model.py.ipynb
diff --git a/workflow/notebooks/2_clock_plot.py.ipynb b/workflow/notebooks/2_clock_plot.py.ipynb