fix branch support param

ktmeaton · Jun 19, 2020 · c46c2c5 · c46c2c5
1 parent 3cebf05
commit c46c2c5
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/.github/workflows/pipeline.yaml b/.github/workflows/pipeline.yaml
@@ -69,7 +69,7 @@ jobs:
           conda info --envs
           conda activate ${PHYLO_CONDA_ENV}
           nextflow run ktmeaton/plague-phylogeography -r ${PHYLO_NF_REV}\
-            --max_datasets_assembly 4 \
+            --max_datasets_assembly 2 \
             --skip_sra_download \
             --skip_outgroup_download \
             --iqtree_runs 1 \

diff --git a/main.nf b/main.nf
@@ -1189,7 +1189,7 @@ process iqtree{
   fi
 
   # Setup the branch support param
-  if [[ ${params.skip_outgroup_download} == "true"  ]]; then
+  if [[ ${params.iqtree_branch_support} == "true"  ]]; then
     BRANCH_SUPPORT="--bnni --alrt ${params.iqtree_alrt} --ufboot ${params.iqtree_ufboot}";
     SUFFIX="_bootstrap";
   else