remove output dir from eager rule

ktmeaton · Feb 27, 2021 · cd56bf5 · cd56bf5
1 parent 9fc675c
commit cd56bf5
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/docs/notes/Notes_Development.md b/docs/notes/Notes_Development.md
@@ -3,7 +3,9 @@
 1. Separate mugration notebook into model and plot.
 1. Add a heatmap test, output to misc.
 1. Create a new rule to generate locus coverage.
+1. Remove output directory of eager rule.
 
 ## TO-DO
 
 1. Create gene by gene coverage.
+1. Add locus coverage output to report
diff --git a/workflow/rules/alignment.smk b/workflow/rules/alignment.smk
@@ -20,7 +20,6 @@ rule eager:
     output:
         final_bam = results_dir + "/eager/{reads_origin}/{sample}/final_bams/{sample}.bam",
         eager_tsv = results_dir + "/eager/{reads_origin}/{sample}/metadata_{sample}.tsv",
-        snippy_dir = directory(results_dir + "/eager/{reads_origin}/{sample}/"),
     wildcard_constraints:
         reads_origin = "(sra|local)",
     resources: