fixed the mugration bug

ktmeaton · May 15, 2020 · d778add · d778add
1 parent c47e340
commit d778add
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/docs/exhibit/exhibit_dhsi2020.rst b/docs/exhibit/exhibit_dhsi2020.rst
@@ -148,7 +148,7 @@ Note: Investigate the  --sampling-bias-correction option.
           augur traits \
               --tree morelli2010/nextstrain/tree.nwk \
               --metadata morelli2010/nextstrain/metadata_nextstrain_edit.tsv \
-              --columns BioSampleGeographicLocation BioSampleBiovar AssemblyTotalLength \
+              --columns BioSampleGeographicLocation BioSampleBiovar \
               --confidence \
               --output morelli2010/nextstrain/traits.json
 

diff --git a/morelli2010/nextstrain/metadata_nextstrain_edit.tsv b/morelli2010/nextstrain/metadata_nextstrain_edit.tsv
@@ -9,7 +9,7 @@ GCA_000168235.2_ASM16823v2_genomic	SAMN02404398	ftp://ftp.ncbi.nlm.nih.gov/genom
 GCA_000006645.1_ASM664v1_genomic	SAMN02604093	ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/006/645/GCA_000006645.1_ASM664v1	KIM10+	1968-XX-XX	Kurdistan	Medievalis
 GCA_000018805.1_ASM1880v1_genomic	SAMN02604042	ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/018/805/GCA_000018805.1_ASM1880v1	Angola	1984-XX-XX	Angola	Pestoides
 GCA_000007885.1_ASM788v1_genomic	SAMN02602970	ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/007/885/GCA_000007885.1_ASM788v1	91001	1970-XX-XX	China	Microtus
-GCA_000016445.1_ASM1644v1_genomic	SAMN02598373	ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/016/445/GCA_000016445.1_ASM1644v1	Pestoides F	1984-XX-XX	Russia	Pestoides
+GCA_000016445.1_ASM1644v1_genomic	SAMN02598373	ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/016/445/GCA_000016445.1_ASM1644v1	PestoidesF	1984-XX-XX	Russia	Pestoides
 GCA_000013825.1_ASM1382v1_genomic	SAMN02598369	ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/013/825/GCA_000013825.1_ASM1382v1	Antiqua	1965-XX-XX	Congo	Antiqua
 GCA_000168835.1_ASM16883v1_genomic	SAMN02404406	ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/168/835/GCA_000168835.1_ASM16883v1	FV-1	2001-XX-XX	USA	Orientalis
 GCA_000182485.1_ASM18248v1_genomic	SAMN02403941	ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/182/485/GCA_000182485.1_ASM18248v1	Nepal516	1967-XX-XX	Nepal	Antiqua