add sql query limit to avoid REMOVE SRA samples

ktmeaton · Nov 12, 2020 · eeda3a9 · eeda3a9
1 parent 1ade32f
commit eeda3a9
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/config/snakemake.yaml b/config/snakemake.yaml
@@ -27,7 +27,7 @@ sqlite_select_command_sra : SELECT
 #                              BioSample
 #                              LEFT JOIN SRA
 #                                ON SRABioSampleAccession = BioSampleAccession
-#                                WHERE (BioSampleComment LIKE '%KEEP%SRA%Ancient%')
+#                                WHERE (BioSampleComment LIKE '%KEEP%SRA%Ancient%' AND SRAComment NOT LIKE "%REMOVE%")
 sqlite_select_command_ref : SELECT
                                AssemblyFTPGenbank
                              FROM