results for 2020-11-09

ktmeaton · Nov 10, 2020 · efc513f · efc513f
1 parent d370523
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diff --git a/docs/results/2020-11-09/iqtree/iqtree-core_chromosome.filter5.iqtree b/docs/results/2020-11-09/iqtree/iqtree-core_chromosome.filter5.iqtree
diff --git a/docs/results/2020-11-09/iqtree/iqtree-core_chromosome.filter5.log b/docs/results/2020-11-09/iqtree/iqtree-core_chromosome.filter5.log
diff --git a/docs/results/2020-11-09/iqtree/iqtree-core_chromosome.filter5.treefile b/docs/results/2020-11-09/iqtree/iqtree-core_chromosome.filter5.treefile
diff --git a/docs/results/2020-11-09/report/report.html b/docs/results/2020-11-09/report/report.html
diff --git a/workflow/report/report.html b/workflow/report/report.html
diff --git a/workflow/rules/phylogeny.smk b/workflow/rules/phylogeny.smk
@@ -15,6 +15,10 @@ rule iqtree:
                       caption=os.path.join(report_dir,"iqtree.rst"),
                       category="Phylogenetics",
                       subcategory="IQTREE"),
+        iqtree = report(results_dir + "/iqtree/{reads_origin}/iqtree-core_{locus_name}.filter{missing_data}.iqtree",
+                      caption=os.path.join(report_dir,"iqtree.rst"),
+                      category="Logs",
+                      subcategory="Phylogeny"),
         log = report(os.path.join(logs_dir,"iqtree/{reads_origin}/iqtree-core_{locus_name}.filter{missing_data}.log"),
                      caption=os.path.join(report_dir, "logs.rst"),
                      category="Logs",