reinstate update check

ktmeaton · Jul 24, 2020 · f095053 · f095053
1 parent 3de043c
commit f095053
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diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yaml
@@ -61,15 +61,15 @@ jobs:
       #------------------------------------------------------------------------#
       # Commit and push the new README
       - name: add and commit README
-        #if: steps.compile-docs.outputs.readme-update == 'true'
+        if: steps.compile-docs.outputs.readme-update == 'true'
         run: |
           git config --local user.email "action@github.com"
           git config --local user.name "GitHub Action"
           git add -f docs/README.rst
           git commit -m "update docs README"
 
       - name: push README
-        #if: steps.compile-docs.outputs.readme-update == 'true'
+        if: steps.compile-docs.outputs.readme-update == 'true'
         uses: ad-m/github-push-action@master
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}

diff --git a/README.md b/README.md
@@ -106,6 +106,8 @@ nextflow run ktmeaton/plague-phylogeography \
   --sqlite_select_command_sra "\"SELECT BioSampleAccession,SRARunAccession,SRALibraryLayout,SRAFileURL FROM Master WHERE (SRARunAccession = 'SRR1048902' OR SRARunAccession = 'SRR1048905')\"" \
   --max_datasets_sra 2 \
   --skip_outgroup_download \
+  --max_cpus 8 \
+  --max_memory 8.GB \
   --outdir test
 ```