mkdocs.yml

site_name: localpdb
site_author: Jan Ludwiczak
repo_url: https://github.com/labstructbioinf/localpdb
docs_dir: docs
theme:
  name: material
  logo: "img/logo.svg"
  favicon: "img/favicon.ico"
  palette:
    primary: "1c1e52"
plugins:
  - mkdocs-jupyter
markdown_extensions:
  - admonition:
  - pymdownx.inlinehilite:
  - pymdownx.superfences:
nav:
    - Home: index.md
    - Overview: overview.md
    - Setup: setup.md
    - API:
        - localpdb.PDB: lpdb.md
        - localpdb.PDB.entries: lpdb_entries.md
        - localpdb.PDB.chains: lpdb_chains.md
        - localpdb.PDB.search*: lpdb_search.md
    - Plugins:
        - Overview: plugins.md
        - Build a custom plugin: plugin_guide.md
    - Advanced examples:
        - Amino acid preferences in viral coiled-coil domains: viral_ccs.ipynb
        - HIV Protease dynamics inferred from PDB structures: hiv_protease.ipynb
        - Building a dataset for machine learning: deepcoil_dataset.ipynb
extra_css:
  - stylesheets/extra.css