makefile

PYTHON_VERSION = 3

reformat:
	# Requires black: pip3 install black
	black deepimpute
	black tests
	black setup.py

pytest:
	pytest

test:
	# We run the tests separately instead of with unittest to
	# avoid TensorFlow issue #8220 related to multiprocessing hanging.
	python${PYTHON_VERSION} ./tests/util_test.py
	python${PYTHON_VERSION} ./tests/maskedArrays_test.py
	python${PYTHON_VERSION} ./tests/multinet_test.py
	python${PYTHON_VERSION} ./tests/deepImpute_test.py

coverage:
	coverage${PYTHON_VERSION} run -p --source ./deepimpute/ ./tests/deepImpute_test.py
	coverage${PYTHON_VERSION} run -p --source ./deepimpute/ ./tests/util_test.py
	coverage${PYTHON_VERSION} run -p --source ./deepimpute/ ./tests/maskedArrays_test.py
	coverage${PYTHON_VERSION} run -p --source ./deepimpute/ ./tests/multinet_test.py
	coverage${PYTHON_VERSION} combine
	coverage${PYTHON_VERSION} html
	echo "Results in: file://${CURDIR}/htmlcov/index.html"

publish:
	pip install .
	python setup.py sdist
	twine upload dist/*