Dockerfile.dev

FROM condaforge/miniforge3 

RUN apt-get --yes -qq update && \
    apt-get --yes -qq upgrade && \
    DEBIAN_FRONTEND=noninteractive \ 
    apt-get --yes -qq install \
                         build-essential \
                         cmake \
                         g++ \
                         gcc \
                         git \
                         openmpi-bin \
                         zsh && \
    apt-get --yes -qq clean && \
    rm -rf /var/lib/apt/lists/*


SHELL ["/bin/bash", "-c"]

RUN conda init bash
RUN conda init zsh

RUN mkdir /home/psvWave
ADD .  /home/psvWave

RUN conda create -n psvWave-dev python==3.9 && \
    echo "conda activate psvWave-dev" >> $HOME/.zshrc && \
    echo "conda activate psvWave-dev" >> $HOME/.bashrc
SHELL ["conda", "run", "-n", "psvWave-dev", "/bin/bash", "-c"]

# Dependencies for documentation building
RUN apt-get --yes -qq update \
 && apt-get --yes -qq upgrade \
 && DEBIAN_FRONTEND=noninteractive \ 
 apt-get --yes -qq install \
                      pandoc \
                      doxygen \
 && apt-get --yes -qq clean \
 && rm -rf /var/lib/apt/lists/*

RUN cd /home/psvWave && \
    pip install -v -e .[dev]

WORKDIR /home/psvWave/

CMD ["/bin/zsh" ]