README.md

Redcap_to_bids

This python script will convert redcap export into bids format

Configuration file

Use the config.json file to set bids_root, events mapping, subjects, etc..

Requirements

$ pip install PyCap

$ pip install pandas

How to run

$ python redcaptobids.py https://redcap.example.edu/api/ SomeSuperSecretAPIKeyThatNobodyElseShouldHave

Output

The script will create tsv phenotypes and json sidecar templates for each. Thiese phenotypes outputs are based on the instrument_mapping element in the config.json

anxiety_sensitivity_index_asi3 ->

/phenotype/anxiety_sensitivity_index_asi3.tsv
/phenotype/anxiety_sensitivity_index_asi3.json