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.gitignore
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# ensure no data gets committed!
data/
# built HTML documentation
docs/_build
# If macOS opens files in Finder these may appear
._.DS_Store
.DS_Store
# conda env directories
env/
env-*/
include/AnnotationHubCache
logs
__pycache__
references_data
workflows/rnaseq/downstream/group.tsv
workflows/rnaseq/downstream/rnaseq.html
workflows/rnaseq/downstream/rnaseq_cache
workflows/rnaseq/downstream/rnaseq_files
workflows/rnaseq/downstream/clusterprofiler
workflows/rnaseq/downstream/upset_plots
workflows/rnaseq/downstream/final_clusters
workflows/rnaseq/downstream/rnaseq.log
workflows/rnaseq/downstream/*tsv
workflows/chipseq/data
workflows/rnaseq/data
workflows/colocalization/results
workflows/rnaseq/downstream/functional-enrichment.html
workflows/rnaseq/downstream/functional-enrichment_cache/
workflows/rnaseq/downstream/functional-enrichment_files/
workflows/rnaseq/downstream/Rplots.pdf
*.Rds
*.Rd
work
logs
references_dir/
slurm*out
# log files from workflows
Snakefile.log
# files created from running tests
*Snakefile.test
# snakemake metadata
.snakemake
# created when building track hubs
staging/
# created when checking strandedness of libraries
strand_check/
# various files and directories created by downstream tasks
workflows/colocalization/results
workflows/figures/figures
workflows/rnaseq/downstream/results
workflows/rnaseq/downstream/rnaseq_cache
workflows/rnaseq/downstream/rnaseq_files
workflows/rnaseq/downstream/rnaseq.html
*.xlsx
._*
Rplots.pdf
/lib/include/*