master_reg_fish_20180227_vid1.m

clear all;
close all;

%% load parameters
param = init_param();

%%
[~,hostname] = system('hostname')
param.hostname = strtrim(hostname);

setup_par

if ~isempty(strfind(param.hostname, 'Justins-Mac'))
	param.ppath = '/Users/justin/Desktop/DDLFM';
	addpath([param.ppath '/lotus-registration']);
	param.ipath = [param.ppath '/fish/20180227/vid1'];
	param.opath = param.ipath;
    param.parallel = false;
elseif ~isempty(strfind(param.hostname, 'willis'))
	param.ppath = '/home/jkinney/Desktop/DDLFM';
	addpath([param.ppath '/lotus-registration']);
	param.ipath = [param.ppath '/fish/20180227/vid1'];
	param.opath = param.ipath;
    param.parallel = false;
else
	param.ppath = '/home/jkinney';
	addpath([param.ppath '/lotus-registration']);
 	param.ipath = '/om/project/boyden/DualLensLightField/01_23_18_NLS/video1';
	param.opath = '/om/user/jkinney/DLFM/fish/20180227/vid1';
end
param.inputFilePath1 = [param.ipath '/horizontal/Reconstructed/'];
param.inputFilePath2 = [param.ipath '/vertical/Reconstructed/'];

%%
param.savePath = [param.opath '/interpolate/'];
param.voxel_x = 0.323; % um
param.voxel_y = 0.323; % um
param.voxel_z = 4.0;     % um

%param.N = 20000;
param.pop_thresh = 0.997; %HARDCODED

param

param.inputFileName = {'Recon3D_solver_1_FrameNumber_0001.mat'};
register(param)
close all;

param.inputFileName = {'Recon3D_solver_1_FrameNumber_0500.mat'};
register(param)
close all;