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I am trying to do Lagrangian particle tracking with the python package parcels on the LEAP pangeo hub, but upon
pset.execute(
kernel, # the kernel (which defines how particles move)
runtime=timedelta(days=359), # the total length of the run
dt=timedelta(days=1), # the timestep of the kernel
output_file=output_file,
)
I get
RuntimeError: Error during compilation:
Compilation command: ['/srv/conda/envs/notebook/bin/x86_64-conda-linux-gnu-cc', '-Wall', '-fPIC', '-std=gnu11', '-I/srv/conda/envs/notebook/lib/python3.11/site-packages/parcels/include', '-I.', '-g', '-O3', '-DDOUBLE_COORD_VARIABLES', '-m64', '-o', '/tmp/parcels-1000/lib5e10b83c66a2e94be7fac34be5fdd62e_0.so', '/tmp/parcels-1000/5e10b83c66a2e94be7fac34be5fdd62e_0.c', '-shared', '-lm', '-m64']
Source/Destination file: /tmp/parcels-1000/5e10b83c66a2e94be7fac34be5fdd62e_0.c
Log file: /tmp/parcels-1000/5e10b83c66a2e94be7fac34be5fdd62e_0.log
Log output: /srv/conda/envs/notebook/bin/../lib/gcc/x86_64-conda-linux-gnu/12.3.0/../../../../x86_64-conda-linux-gnu/bin/ld: cannot find -lgcc: No such file or directory
/srv/conda/envs/notebook/bin/../lib/gcc/x86_64-conda-linux-gnu/12.3.0/../../../../x86_64-conda-linux-gnu/bin/ld: cannot find -lgcc: No such file or directory
collect2: error: ld returned 1 exit status
If you are on macOS, it might help to type 'export CC=gcc'
I would have to put a little bit of effort into providing a minimal (reproducible) example. Before doing so, I wanted to hear if anyone has an immediate idea what is going wrong?
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I am trying to do Lagrangian particle tracking with the python package
parcels
on the LEAP pangeo hub, but uponI get
I would have to put a little bit of effort into providing a minimal (reproducible) example. Before doing so, I wanted to hear if anyone has an immediate idea what is going wrong?
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