build.sbt

import sbt.Keys._

organization := "org.aertslab"
name         := "GRNBoost"
description  := "A scalable gene regulatory network inference library"

scalaVersion := "2.11.11"
sparkVersion := "2.1.0"
sparkComponents ++= Seq("core", "mllib", "sql", "hive")

javaOptions ++= Seq("-Xms1G", "-Xmx8G", "-XX:MaxPermSize=8G", "-XX:+CMSClassUnloadingEnabled")
parallelExecution in Test := false

// uncomment with respect to your operating system if you do not have xgboost in your Maven repository
// unmanagedBase := baseDirectory.value / "lib_amazon_linux"
// unmanagedBase := baseDirectory.value / "lib_max_os"
unmanagedBase := baseDirectory.value / "lib_ubuntu"

// See http://stackoverflow.com/questions/28565837/filename-too-long-sbt
scalacOptions ++= Seq("-Xmax-classfile-name","78")

resolvers += Resolver.mavenLocal
resolvers += Resolver.bintrayRepo("bkirwi", "maven")
resolvers += "Spark Packages Repo" at "http://dl.bintray.com/spark-packages/maven"

libraryDependencies ++= Seq(

  // uncomment this if you have xgboost built in your Maven repository
  // "ml.dmlc" % "xgboost4j" % "[0.7,)" % "provided" exclude("com.esotericsoftware.kryo", "kryo"),

  "com.softwaremill.quicklens" %% "quicklens" % "1.4.8",
  "com.github.scopt"           %% "scopt"     % "3.6.0",

  "org.scalactic"   %% "scalactic"          % "3.0.1"       % "test",
  "ch.qos.logback"  %  "logback-classic"    % "1.2.3"       % "test",
  "com.holdenkarau" %% "spark-testing-base" % "2.1.1_0.7.1" % "test"

)

// assembly config
assemblyJarName := "GRNBoost.jar"
test in assembly := {}