diff --git a/FAQ.md b/FAQ.md index 94a1bbce..d2ce9da3 100644 --- a/FAQ.md +++ b/FAQ.md @@ -2,7 +2,7 @@ Without `-a`, `-c` or `--cs`, minimap2 only finds *approximate* mapping locations without detailed base alignment. In particular, the start and end -positions of the alignment are impricise. With one of those options, minimap2 +positions of the alignment are imprecise. With one of those options, minimap2 will perform base alignment, which is generally more accurate but is much slower. diff --git a/minimap2.1 b/minimap2.1 index 2a2a9859..352396e2 100644 --- a/minimap2.1 +++ b/minimap2.1 @@ -758,7 +758,7 @@ s2 i Chaining score of the best secondary chain NM i Total number of mismatches and gaps in the alignment MD Z To generate the ref sequence in the alignment AS i DP alignment score -SA Z List of other supplementary alignments +SA Z List of other supplementary alignments (with approximate CIGAR strings) ms i DP score of the max scoring segment in the alignment nn i Number of ambiguous bases in the alignment ts A Transcript strand (splice mode only)