From 9667468e89d5c7702d4749381b883f8292bfac25 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Mon, 11 Mar 2024 22:46:47 -0400 Subject: [PATCH] NEWS draft --- NEWS.md | 35 ++++++++++++++++++++++++++++++++++- 1 file changed, 34 insertions(+), 1 deletion(-) diff --git a/NEWS.md b/NEWS.md index ff0dfbd6..6fc45098 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,9 +1,42 @@ +Release 2.27-rXXXX (XX March 2024) +---------------------------------- + +Notable changes to minimap2: + + * New feature: added the `lr:hq` preset for accurate long reads at ~1% error + rate. This was suggested by Oxford Nanopore developers (#1127). It is not + clear if this preset also works well for PacBio HiFi reads. + + * New feature: added the `map-iclr` preset for Illumina Complete Long Reads + (#1069), provided by Illumina developers. This change also added option `-b` + to specify mismatch penalty for transition mutations. + + * New feature: added option `--ds` to generate a new `ds:Z` tag. `ds` + indicates uncertainty in INDEL positions. It is an extension to `cs`. The + `mgutils-es6.js` script in minigraph parses `ds`. + + * Bugfix: avoided a NULL pointer dereference (#1154). + + * Bugfix: reverted the value of `ms:i` to pre-2.22 versions (#1146). This was + an oversight. See fcd4df2 for details. + +Notable changes to paftools.js and mappy: + + * New feature: expose `bw_long` to mappy's Aligner class (#1124). + + * Bugfix: fixed several compatibility issues with k8 v1.0 (#1161 and #1166). + Subcommands "call", "pbsim2fq" and "mason2fq" were not working with v1.0. + +(2.27: XX March 2024, rXXXX) + + + Release 2.26-r1175 (29 April 2023) ---------------------------------- Fixed the broken Python package. This is the only change. -(2.25: 25 April 2023, r1173) +(2.26: 25 April 2023, r1173)