From fc2e1607d73ea4870e6f396697c79051aff23eed Mon Sep 17 00:00:00 2001 From: Pesho Ivanov Date: Wed, 3 Jan 2024 17:06:08 +0300 Subject: [PATCH] Update paftools.js (#1145) In mapeval "-Q INT" reports wrong alignments with mapQ>=INT, not with mapQ>INT --- misc/paftools.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/misc/paftools.js b/misc/paftools.js index e640f951..c0c4eee5 100755 --- a/misc/paftools.js +++ b/misc/paftools.js @@ -2076,7 +2076,7 @@ function paf_mapeval(args) warn("Usage: paftools.js mapeval [options] |"); warn("Options:"); warn(" -r FLOAT mapping correct if overlap_length/union_length>FLOAT [" + ovlp_ratio + "]"); - warn(" -Q INT print wrong mappings with mapQ>INT [don't print]"); + warn(" -Q INT print wrong mappings with mapQ>=INT [don't print]"); warn(" -m INT 0: eval the longest aln only; 1: first aln only; 2: all primary aln [0]"); exit(1); }