diff --git a/configure.ac b/configure.ac index 72246e13a..e89517b1d 100644 --- a/configure.ac +++ b/configure.ac @@ -88,11 +88,11 @@ AC_ARG_ENABLE(mpi, # Check if the user disabled program options # ############################################## AC_ARG_ENABLE([boost-program-options], - AS_HELP_STRING([--disable-boost-program-options], [Disables use + AS_HELP_STRING([--enable-boost-program-options], [Enables use of boost program options for parsing the QUESO - input file. GetPot will be used instead.]), - [enable_program_options="no"], - [enable_program_options="yes"]) + input file. GetPot will not be used.]), + [enable_program_options="yes"], + [enable_program_options="no"]) #------------------- # Compilers and MPI diff --git a/test/t01_valid_cycle/tgaCycle.inp b/test/t01_valid_cycle/tgaCycle.inp index f6d1bf5b8..0771fae18 100644 --- a/test/t01_valid_cycle/tgaCycle.inp +++ b/test/t01_valid_cycle/tgaCycle.inp @@ -3,9 +3,9 @@ ############################################### #env_help = anything env_numSubEnvironments = 1 -env_subDisplayFileName = outputData/screen +env_subDisplayFileName = 'outputData/screen' env_subDisplayAllowAll = 0 -env_subDisplayAllowedSet = 0 1 +env_subDisplayAllowedSet = '0 1' env_displayVerbosity = 2 env_syncVerbosity = 0 env_seed = 0 @@ -16,7 +16,7 @@ env_seed = 0 cycle_cal_ip_help = anything cycle_cal_ip_computeSolution = 1 cycle_cal_ip_dataOutputFileName = outputData/tgaCalOutput -cycle_cal_ip_dataOutputAllowedSet = 0 1 +cycle_cal_ip_dataOutputAllowedSet = '0 1' ############################################### # 'cal_ip_': information for Metropolis-Hastings algorithm @@ -26,15 +26,15 @@ cycle_cal_ip_dataOutputAllowedSet = 0 1 ############################################### cycle_cal_ip_mh_help = anything cycle_cal_ip_mh_dataOutputFileName = outputData/tgaCalOutput -cycle_cal_ip_mh_dataOutputAllowedSet = 0 1 +cycle_cal_ip_mh_dataOutputAllowedSet = '0 1' cycle_cal_ip_mh_rawChain_dataInputFileName = . # outputData/file_cal_ip_raw1 cycle_cal_ip_mh_rawChain_size = 16384 cycle_cal_ip_mh_rawChain_generateExtra = 0 cycle_cal_ip_mh_rawChain_displayPeriod = 20000 cycle_cal_ip_mh_rawChain_measureRunTimes = 1 -cycle_cal_ip_mh_rawChain_dataOutputFileName = outputData/file_cal_ip_raw2 -cycle_cal_ip_mh_rawChain_dataOutputAllowedSet = 0 1 +cycle_cal_ip_mh_rawChain_dataOutputFileName = 'outputData/file_cal_ip_raw2' +cycle_cal_ip_mh_rawChain_dataOutputAllowedSet = '0 1' cycle_cal_ip_mh_rawChain_computeStats = 1 cycle_cal_ip_mh_displayCandidates = 0 @@ -42,7 +42,7 @@ cycle_cal_ip_mh_putOutOfBoundsInChain = 1 cycle_cal_ip_mh_tk_useLocalHessian = 0 cycle_cal_ip_mh_tk_useNewtonComponent = 1 cycle_cal_ip_mh_dr_maxNumExtraStages = 1 -cycle_cal_ip_mh_dr_listOfScalesForExtraStages = 5. 4. 3. +cycle_cal_ip_mh_dr_listOfScalesForExtraStages = '5. 4. 3.' cycle_cal_ip_mh_am_initialNonAdaptInterval = 0 cycle_cal_ip_mh_am_adaptInterval = 100 cycle_cal_ip_mh_am_eta = 1.92 @@ -52,13 +52,13 @@ cycle_cal_ip_mh_filteredChain_generate = 1 cycle_cal_ip_mh_filteredChain_discardedPortion = 0. cycle_cal_ip_mh_filteredChain_lag = 20 cycle_cal_ip_mh_filteredChain_dataOutputFileName = . -cycle_cal_ip_mh_filteredChain_dataOutputAllowedSet = 0 1 +cycle_cal_ip_mh_filteredChain_dataOutputAllowedSet = '0 1' cycle_cal_ip_mh_filteredChain_computeStats = 1 #cycle_cal_ip_mh_rawChain_stats_help = anything -cycle_cal_ip_mh_rawChain_stats_initialDiscardedPortions = 0. .05 .10 .15 .20 .25 .30 .35 .40 +cycle_cal_ip_mh_rawChain_stats_initialDiscardedPortions = '0. .05 .10 .15 .20 .25 .30 .35 .40' cycle_cal_ip_mh_rawChain_stats_bmm_run = 0 -cycle_cal_ip_mh_rawChain_stats_bmm_lengths = 50 100 200 250 +cycle_cal_ip_mh_rawChain_stats_bmm_lengths = '50 100 200 250' cycle_cal_ip_mh_rawChain_stats_fft_compute = 0 cycle_cal_ip_mh_rawChain_stats_fft_paramId = 0 cycle_cal_ip_mh_rawChain_stats_fft_size = 2048 @@ -99,7 +99,7 @@ cycle_cal_ip_mh_rawChain_stats_corrMatrix_compute = 1 #cycle_cal_ip_mh_filteredChain_stats_help = anything cycle_cal_ip_mh_filteredChain_stats_initialDiscardedPortions = 0. cycle_cal_ip_mh_filteredChain_stats_bmm_run = 0 -cycle_cal_ip_mh_filteredChain_stats_bmm_lengths = 50 100 200 250 +cycle_cal_ip_mh_filteredChain_stats_bmm_lengths = '50 100 200 250' cycle_cal_ip_mh_filteredChain_stats_fft_compute = 0 cycle_cal_ip_mh_filteredChain_stats_fft_paramId = 0 cycle_cal_ip_mh_filteredChain_stats_fft_size = 2048 @@ -144,8 +144,8 @@ cycle_cal_fp_help = anything cycle_cal_fp_computeSolution = 1 cycle_cal_fp_computeCovariances = 1 cycle_cal_fp_computeCorrelations = 1 -cycle_cal_fp_dataOutputFileName = outputData/tgaCalOutput -cycle_cal_fp_dataOutputAllowedSet = 0 1 +cycle_cal_fp_dataOutputFileName = 'outputData/tgaCalOutput' +cycle_cal_fp_dataOutputAllowedSet = '0 1' ############################################### # 'cal_fp_': information for Monte Carlo algorithm @@ -154,11 +154,11 @@ cycle_cal_fp_dataOutputAllowedSet = 0 1 # 16384 131072 1048576 2097152 16777216 ############################################### cycle_cal_fp_mc_help = anything -cycle_cal_fp_mc_dataOutputFileName = outputData/tgaCalOutput -cycle_cal_fp_mc_dataOutputAllowedSet = 0 1 +cycle_cal_fp_mc_dataOutputFileName = 'outputData/tgaCalOutput' +cycle_cal_fp_mc_dataOutputAllowedSet = '0 1' cycle_cal_fp_mc_pseq_dataOutputFileName = . -cycle_cal_fp_mc_pseq_dataOutputAllowedSet = 0 1 +cycle_cal_fp_mc_pseq_dataOutputAllowedSet = '0 1' cycle_cal_fp_mc_pseq_computeStats = 1 #cycle_cal_fp_mc_pseq_stats_help = anything @@ -177,14 +177,14 @@ cycle_cal_fp_mc_qseq_dataInputFileName = . # outputData/file_cal_fp_qoi1 cycle_cal_fp_mc_qseq_size = 1048576 cycle_cal_fp_mc_qseq_displayPeriod = 20000 cycle_cal_fp_mc_qseq_measureRunTimes = 1 -cycle_cal_fp_mc_qseq_dataOutputFileName = outputData/file_cal_fp_qoi2 -cycle_cal_fp_mc_qseq_dataOutputAllowedSet = 0 1 +cycle_cal_fp_mc_qseq_dataOutputFileName = 'outputData/file_cal_fp_qoi2' +cycle_cal_fp_mc_qseq_dataOutputAllowedSet = '0 1' cycle_cal_fp_mc_qseq_computeStats = 1 #cycle_cal_fp_mc_qseq_stats_help = anything cycle_cal_fp_mc_qseq_stats_initialDiscardedPortions = 0. cycle_cal_fp_mc_qseq_stats_bmm_run = 0 -cycle_cal_fp_mc_qseq_stats_bmm_lengths = 50 100 200 250 +cycle_cal_fp_mc_qseq_stats_bmm_lengths = '50 100 200 250' cycle_cal_fp_mc_qseq_stats_fft_compute = 0 cycle_cal_fp_mc_qseq_stats_fft_paramId = 0 cycle_cal_fp_mc_qseq_stats_fft_size = 2048 @@ -227,8 +227,8 @@ cycle_cal_fp_mc_qseq_stats_corrMatrix_compute = 1 ############################################### cycle_val_ip_help = anything cycle_val_ip_computeSolution = 1 -cycle_val_ip_dataOutputFileName = outputData/tgaValOutput -cycle_val_ip_dataOutputAllowedSet = 0 1 +cycle_val_ip_dataOutputFileName = 'outputData/tgaValOutput' +cycle_val_ip_dataOutputAllowedSet = '0 1' ############################################### # 'val_ip_': information for Metropolis-Hastings algorithm @@ -237,16 +237,16 @@ cycle_val_ip_dataOutputAllowedSet = 0 1 # 16384 131072 1048576 2097152 16777216 ############################################### cycle_val_ip_mh_help = anything -cycle_val_ip_mh_dataOutputFileName = outputData/tgaValOutput -cycle_val_ip_mh_dataOutputAllowedSet = 0 1 +cycle_val_ip_mh_dataOutputFileName = 'outputData/tgaValOutput' +cycle_val_ip_mh_dataOutputAllowedSet = '0 1' cycle_val_ip_mh_rawChain_dataInputFileName = . # outputData/file_val_ip_raw1 cycle_val_ip_mh_rawChain_size = 16384 cycle_val_ip_mh_rawChain_generateExtra = 0 cycle_val_ip_mh_rawChain_displayPeriod = 20000 cycle_val_ip_mh_rawChain_measureRunTimes = 1 -cycle_val_ip_mh_rawChain_dataOutputFileName = outputData/file_val_ip_raw2 -cycle_val_ip_mh_rawChain_dataOutputAllowedSet = 0 1 +cycle_val_ip_mh_rawChain_dataOutputFileName = 'outputData/file_val_ip_raw2' +cycle_val_ip_mh_rawChain_dataOutputAllowedSet = '0 1' cycle_val_ip_mh_rawChain_computeStats = 1 cycle_val_ip_mh_displayCandidates = 0 @@ -254,7 +254,7 @@ cycle_val_ip_mh_putOutOfBoundsInChain = 1 cycle_val_ip_mh_tk_useLocalHessian = 0 cycle_val_ip_mh_tk_useNewtonComponent = 1 cycle_val_ip_mh_dr_maxNumExtraStages = 1 -cycle_val_ip_mh_dr_listOfScalesForExtraStages = 5. 4. 3. +cycle_val_ip_mh_dr_listOfScalesForExtraStages = '5. 4. 3.' cycle_val_ip_mh_am_initialNonAdaptInterval = 0 cycle_val_ip_mh_am_adaptInterval = 100 cycle_val_ip_mh_am_eta = 1.92 @@ -264,13 +264,13 @@ cycle_val_ip_mh_filteredChain_generate = 1 cycle_val_ip_mh_filteredChain_discardedPortion = 0. cycle_val_ip_mh_filteredChain_lag = 20 cycle_val_ip_mh_filteredChain_dataOutputFileName = . -cycle_val_ip_mh_filteredChain_dataOutputAllowedSet = 0 1 +cycle_val_ip_mh_filteredChain_dataOutputAllowedSet = '0 1' cycle_val_ip_mh_filteredChain_computeStats = 1 #cycle_val_ip_mh_rawChain_stats_help = anything -cycle_val_ip_mh_rawChain_stats_initialDiscardedPortions = 0. .05 .10 .15 .20 .25 .30 .35 .40 +cycle_val_ip_mh_rawChain_stats_initialDiscardedPortions = '0. .05 .10 .15 .20 .25 .30 .35 .40' cycle_val_ip_mh_rawChain_stats_bmm_run = 0 -cycle_val_ip_mh_rawChain_stats_bmm_lengths = 50 100 200 250 +cycle_val_ip_mh_rawChain_stats_bmm_lengths = '50 100 200 250' cycle_val_ip_mh_rawChain_stats_fft_compute = 0 cycle_val_ip_mh_rawChain_stats_fft_paramId = 0 cycle_val_ip_mh_rawChain_stats_fft_size = 2048 @@ -311,7 +311,7 @@ cycle_val_ip_mh_rawChain_stats_corrMatrix_compute = 1 #cycle_val_ip_mh_filteredChain_stats_help = anything cycle_val_ip_mh_filteredChain_stats_initialDiscardedPortions = 0. cycle_val_ip_mh_filteredChain_stats_bmm_run = 0 -cycle_val_ip_mh_filteredChain_stats_bmm_lengths = 50 100 200 250 +cycle_val_ip_mh_filteredChain_stats_bmm_lengths = '50 100 200 250' cycle_val_ip_mh_filteredChain_stats_fft_compute = 0 cycle_val_ip_mh_filteredChain_stats_fft_paramId = 0 cycle_val_ip_mh_filteredChain_stats_fft_size = 2048 @@ -356,8 +356,8 @@ cycle_val_fp_help = anything cycle_val_fp_computeSolution = 1 cycle_val_fp_computeCovariances = 1 cycle_val_fp_computeCorrelations = 1 -cycle_val_fp_dataOutputFileName = outputData/tgaValOutput -cycle_val_fp_dataOutputAllowedSet = 0 1 +cycle_val_fp_dataOutputFileName = 'outputData/tgaValOutput' +cycle_val_fp_dataOutputAllowedSet = '0 1' ############################################### # 'val_fp_': information for Monte Carlo algorithm @@ -366,11 +366,11 @@ cycle_val_fp_dataOutputAllowedSet = 0 1 # 16384 131072 1048576 2097152 16777216 ############################################### cycle_val_fp_mc_help = anything -cycle_val_fp_mc_dataOutputFileName = outputData/tgaValOutput -cycle_val_fp_mc_dataOutputAllowedSet = 0 1 +cycle_val_fp_mc_dataOutputFileName = 'outputData/tgaValOutput' +cycle_val_fp_mc_dataOutputAllowedSet = '0 1' cycle_val_fp_mc_pseq_dataOutputFileName = . -cycle_val_fp_mc_pseq_dataOutputAllowedSet = 0 1 +cycle_val_fp_mc_pseq_dataOutputAllowedSet = '0 1' cycle_val_fp_mc_pseq_computeStats = 1 #cycle_val_fp_mc_pseq_stats_help = anything @@ -389,14 +389,14 @@ cycle_val_fp_mc_qseq_dataInputFileName = . # outputData/file_val_fp_qoi1 cycle_val_fp_mc_qseq_size = 1048576 cycle_val_fp_mc_qseq_displayPeriod = 20000 cycle_val_fp_mc_qseq_measureRunTimes = 1 -cycle_val_fp_mc_qseq_dataOutputFileName = outputData/file_val_fp_qoi2 -cycle_val_fp_mc_qseq_dataOutputAllowedSet = 0 1 +cycle_val_fp_mc_qseq_dataOutputFileName = 'outputData/file_val_fp_qoi2' +cycle_val_fp_mc_qseq_dataOutputAllowedSet = '0 1' cycle_val_fp_mc_qseq_computeStats = 1 #cycle_val_fp_mc_qseq_stats_help = anything cycle_val_fp_mc_qseq_stats_initialDiscardedPortions = 0. cycle_val_fp_mc_qseq_stats_bmm_run = 0 -cycle_val_fp_mc_qseq_stats_bmm_lengths = 50 100 200 250 +cycle_val_fp_mc_qseq_stats_bmm_lengths = '50 100 200 250' cycle_val_fp_mc_qseq_stats_fft_compute = 0 cycle_val_fp_mc_qseq_stats_fft_paramId = 0 cycle_val_fp_mc_qseq_stats_fft_size = 2048 diff --git a/test/t02_sip_sfp/example.inp b/test/t02_sip_sfp/example.inp index 0c139b6bf..cc2066036 100644 --- a/test/t02_sip_sfp/example.inp +++ b/test/t02_sip_sfp/example.inp @@ -3,7 +3,7 @@ ############################################### #env_help = anything env_numSubEnvironments = 1 -env_subDisplayFileName = outputData/display +env_subDisplayFileName = 'outputData/display' env_subDisplayAllowAll = 0 env_subDisplayAllowedSet = 0 env_displayVerbosity = 2 @@ -15,23 +15,23 @@ env_seed = 0 ############################################### #ip_help = anything ip_computeSolution = 1 -ip_dataOutputFileName = outputData/sipOutput +ip_dataOutputFileName = 'outputData/sipOutput' ip_dataOutputAllowedSet = 0 ############################################### # 'ip_': information for Metropolis-Hastings algorithm ############################################### #ip_mh_help = anything -ip_mh_dataOutputFileName = outputData/sipOutput -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_dataOutputFileName = 'outputData/sipOutput' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 32768 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 50000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = outputData/ip_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 +ip_mh_rawChain_dataOutputFileName = 'outputData/ip_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1' ip_mh_rawChain_computeStats = 1 ip_mh_displayCandidates = 0 @@ -48,8 +48,8 @@ ip_mh_am_epsilon = 1.e-5 ip_mh_filteredChain_generate = 1 ip_mh_filteredChain_discardedPortion = 0. ip_mh_filteredChain_lag = 16 -ip_mh_filteredChain_dataOutputFileName = outputData/ip_filt_chain -ip_mh_filteredChain_dataOutputAllowedSet = 0 1 +ip_mh_filteredChain_dataOutputFileName = 'outputData/ip_filt_chain' +ip_mh_filteredChain_dataOutputAllowedSet = '0 1' ############################################### # Statistical forward problem (fp) @@ -58,22 +58,22 @@ ip_mh_filteredChain_dataOutputAllowedSet = 0 1 fp_computeSolution = 1 fp_computeCovariances = 1 fp_computeCorrelations = 1 -fp_dataOutputFileName = outputData/sfpOutput -fp_dataOutputAllowedSet = 0 1 +fp_dataOutputFileName = 'outputData/sfpOutput' +fp_dataOutputAllowedSet = '0 1' ############################################### # 'fp_': information for Monte Carlo algorithm ############################################### #fp_mc_help = anything -fp_mc_dataOutputFileName = outputData/sfpOutput -fp_mc_dataOutputAllowedSet = 0 1 +fp_mc_dataOutputFileName = 'outputData/sfpOutput' +fp_mc_dataOutputAllowedSet = '0 1' -fp_mc_pseq_dataOutputFileName = outputData/fp_p_seq -fp_mc_pseq_dataOutputAllowedSet = 0 1 +fp_mc_pseq_dataOutputFileName = 'outputData/fp_p_seq' +fp_mc_pseq_dataOutputAllowedSet = '0 1' fp_mc_qseq_size = 1048576 fp_mc_qseq_displayPeriod = 20000 fp_mc_qseq_measureRunTimes = 1 -fp_mc_qseq_dataOutputFileName = outputData/fp_q_seq -fp_mc_qseq_dataOutputAllowedSet = 0 1 +fp_mc_qseq_dataOutputFileName = 'outputData/fp_q_seq' +fp_mc_qseq_dataOutputAllowedSet = '0 1' diff --git a/test/t03_sequence/example.inp b/test/t03_sequence/example.inp index 6fe2f1989..fbd9b2ee8 100644 --- a/test/t03_sequence/example.inp +++ b/test/t03_sequence/example.inp @@ -3,7 +3,7 @@ ############################################### #env_help = anything env_numSubEnvironments = 1 -env_subDisplayFileName = outputData/display +env_subDisplayFileName = 'outputData/display' env_subDisplayAllowAll = 0 env_subDisplayAllowedSet = 0 env_displayVerbosity = 2 diff --git a/test/t04_bimodal/example_1chain.inp b/test/t04_bimodal/example_1chain.inp index 0f9729f65..d46b4bd40 100644 --- a/test/t04_bimodal/example_1chain.inp +++ b/test/t04_bimodal/example_1chain.inp @@ -3,9 +3,9 @@ ############################################### #env_help = anything env_numSubEnvironments = 1 -env_subDisplayFileName = outputData/display +env_subDisplayFileName = 'outputData/display' env_subDisplayAllowAll = 0 -env_subDisplayAllowedSet = 0 1 +env_subDisplayAllowedSet = '0 1' env_displayVerbosity = 2 env_syncVerbosity = 0 env_seed = -1 @@ -15,7 +15,7 @@ env_seed = -1 ############################################### #ip_help = anything ip_computeSolution = 1 -ip_dataOutputFileName = outputData/sipOutput +ip_dataOutputFileName = 'outputData/sipOutput' ip_dataOutputAllowedSet = 0 ############################################### @@ -24,8 +24,8 @@ ip_dataOutputAllowedSet = 0 #ip_ml_help = anything #ip_ml_restartInputFileName = outputData/rawChain_ml_input #ip_ml_restartChainSize = 10000 -ip_ml_dataOutputFileName = outputData/sipOutput_ml -ip_ml_dataOutputAllowedSet = 0 1 +ip_ml_dataOutputFileName = 'outputData/sipOutput_ml' +ip_ml_dataOutputAllowedSet = '0 1' ############################################### # All levels, unless otherwise specified @@ -53,12 +53,12 @@ ip_ml_6_putOutOfBoundsInChain = 0 ############################################### # Last level (level 4 for 'example_gsl' executable) ############################################### -ip_ml_last_dataOutputFileName = outputData/sipOutput_ml -ip_ml_last_dataOutputAllowedSet = 0 1 +ip_ml_last_dataOutputFileName = 'outputData/sipOutput_ml' +ip_ml_last_dataOutputAllowedSet = '0 1' #ip_ml_last_loadBalance = 0 ip_ml_last_rawChain_size = 10000 -ip_ml_last_rawChain_dataOutputFileName = outputData/rawChain_ml +ip_ml_last_rawChain_dataOutputFileName = 'outputData/rawChain_ml' ip_ml_last_rawChain_dataOutputAllowedSet = 0 ip_ml_last_rawChain_computeStats = 1 ip_ml_last_rawChain_stats_kde_compute = 1 @@ -68,7 +68,7 @@ ip_ml_last_rawChain_stats_corrMatrix_compute = 1 ip_ml_last_filteredChain_generate = 1 ip_ml_last_filteredChain_lag = 2 -ip_ml_last_filteredChain_dataOutputFileName = outputData/filtChain_ml +ip_ml_last_filteredChain_dataOutputFileName = 'outputData/filtChain_ml' ip_ml_last_filteredChain_dataOutputAllowedSet = 0 ip_ml_last_filteredChain_computeStats = 1 ip_ml_last_filteredChain_stats_kde_compute = 1 diff --git a/test/test_Environment/input_test_serialEnv b/test/test_Environment/input_test_serialEnv index 0e42c025e..fd1952445 100644 --- a/test/test_Environment/input_test_serialEnv +++ b/test/test_Environment/input_test_serialEnv @@ -3,7 +3,7 @@ ############################################### #env_help = anything env_numSubEnvironments = 1 -env_subDisplayFileName = output_test_serialEnv/display +env_subDisplayFileName = 'output_test_serialEnv/display' env_subDisplayAllowAll = 0 env_subDisplayAllowedSet = 0 env_displayVerbosity = 2 @@ -15,23 +15,23 @@ env_seed = 0 ############################################### #ip_help = anything ip_computeSolution = 1 -ip_dataOutputFileName = output_test_serialEnv/sipOutput +ip_dataOutputFileName = 'output_test_serialEnv/sipOutput' ip_dataOutputAllowedSet = 0 ############################################### # 'ip_': information for Metropolis-Hastings algorithm ############################################### #ip_mh_help = anything -ip_mh_dataOutputFileName = output_test_serialEnv/sipOutput -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_dataOutputFileName = 'output_test_serialEnv/sipOutput' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 10 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 50000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = output_test_serialEnv/ip_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 +ip_mh_rawChain_dataOutputFileName = 'output_test_serialEnv/ip_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1' ip_mh_rawChain_computeStats = 1 ip_mh_displayCandidates = 0 diff --git a/test/test_InputOptionsParser/test_options_good.txt b/test/test_InputOptionsParser/test_options_good.txt index ba36119a9..2e7f5cca4 100644 --- a/test/test_InputOptionsParser/test_options_good.txt +++ b/test/test_InputOptionsParser/test_options_good.txt @@ -1,7 +1,7 @@ int = -2 unsigned_int = 2 double = -2.0 -bool = false -std_string = hello -set_unsigned_int = 2 3 4 -vector_double = -2.0 3.0 4.0 +bool = 'false' +std_string = 'hello' +set_unsigned_int = '2 3 4' +vector_double = '-2.0 3.0 4.0' diff --git a/test/test_InterpolationSurrogate/queso_input.txt b/test/test_InterpolationSurrogate/queso_input.txt index 779e15570..00e42d004 100644 --- a/test/test_InterpolationSurrogate/queso_input.txt +++ b/test/test_InterpolationSurrogate/queso_input.txt @@ -3,7 +3,7 @@ ############################################### env_help = 1 env_numSubEnvironments = 1 -env_subDisplayFileName = test_output_interp_surrogates/display +env_subDisplayFileName = 'test_output_interp_surrogates/display' env_subDisplayAllowAll = 0 env_subDisplayAllowedSet = 0 env_displayVerbosity = 1000 @@ -13,25 +13,25 @@ env_seed = 0 ############################################### # Statistical inverse problem (ip) ############################################### -ip_help = anything +ip_help = 'anything' ip_computeSolution = 1 -ip_dataOutputFileName = test_output_interp_surrogates/sipOutput +ip_dataOutputFileName = 'test_output_interp_surrogates/sipOutput' ip_dataOutputAllowedSet = 0 ############################################### # 'ip_': information for Metropolis-Hastings algorithm ############################################### -ip_mh_help = anything -ip_mh_dataOutputFileName = test_output_interp_surrogates/sipOutput -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_help = 'anything' +ip_mh_dataOutputFileName = 'test_output_interp_surrogates/sipOutput' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 1 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 2000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = test_output_interp_surrogates/ip_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 +ip_mh_rawChain_dataOutputFileName = 'test_output_interp_surrogates/ip_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1' ip_mh_rawChain_computeStats = 1 ip_mh_displayCandidates = 0 @@ -39,7 +39,7 @@ ip_mh_putOutOfBoundsInChain = 0 ip_mh_tk_useLocalHessian = 0 ip_mh_tk_useNewtonComponent = 0 ip_mh_dr_maxNumExtraStages = 0 -ip_mh_dr_listOfScalesForExtraStages = 5. 10. 20. +ip_mh_dr_listOfScalesForExtraStages = '5. 10. 20.' ip_mh_am_initialNonAdaptInterval = 10 ip_mh_am_adaptInterval = 1 ip_mh_am_eta = 0.384 diff --git a/test/test_Regression/GaussianMean1DRegression_options b/test/test_Regression/GaussianMean1DRegression_options index cf4a76840..a14779cff 100644 --- a/test/test_Regression/GaussianMean1DRegression_options +++ b/test/test_Regression/GaussianMean1DRegression_options @@ -2,7 +2,7 @@ # UQ Environment ############################################### env_numSubEnvironments = 1 -env_subDisplayFileName = outputData/display +env_subDisplayFileName = 'outputData/display' env_subDisplayAllowAll = 1 env_displayVerbosity = 2 env_syncVerbosity = 0 @@ -11,9 +11,9 @@ env_seed = 0 ############################################### # Calibration (cal) stage: statistical inverse problem (ip) ############################################### -ip_help = anything +ip_help = 'anything' ip_computeSolution = 1 -ip_dataOutputFileName = outputData/sipOutput +ip_dataOutputFileName = 'outputData/sipOutput' ip_dataOutputAllowedSet = 0 ############################################### @@ -22,7 +22,7 @@ ip_dataOutputAllowedSet = 0 #ip_ml_restartOutput_levelPeriod = 1 #ip_ml_restartOutput_baseNameForFiles = outputData/quesoRestart #ip_ml_restartInput_baseNameForFiles = outputData/quesoRestart -ip_ml_dataOutputFileName = outputData/sipOutput +ip_ml_dataOutputFileName = 'outputData/sipOutput' ############################################### # 'ip_': information for Metropolis-Hastings algorithm @@ -36,7 +36,7 @@ ip_ml_default_rawChain_size = 15000 ############################################### # Last level ############################################### -ip_ml_last_rawChain_dataOutputFileName = outputData/sipOutput +ip_ml_last_rawChain_dataOutputFileName = 'outputData/sipOutput' ip_ml_last_filteredChain_generate = 1 ip_ml_last_filteredChain_lag = 5 @@ -47,5 +47,5 @@ ip_ml_last_filteredChain_lag = 5 GaussianMean1DRegression_priorMean = 5.0 GaussianMean1DRegression_priorVar = 1.0 GaussianMean1DRegression_samplingVar = 1.0 -GaussianMean1DRegression_dataSet = -0.1437 -0.0982 -1.3616 -0.0171 -1.0290 0.7133 -0.5496 -0.2415 -0.0933 -0.0669 -0.2311 -1.5371 -0.7418 -0.2220 0.0209 1.6905 -0.8379 0.4233 1.7065 1.5676 0.1265 1.0728 1.8126 2.7186 -0.6680 0.5251 -0.4768 0.6027 -1.9304 -2.1159 1.8698 0.3908 -1.2513 1.2597 0.1426 -0.6527 -0.5948 -0.6698 0.3874 0.3455 -0.1988 -0.4574 0.6930 1.3184 -0.2715 -0.9510 0.3593 -0.4184 0.5243 0.2846 -0.3556 -1.4877 -0.8829 1.0829 -0.7700 -0.1138 0.6430 -0.7929 -1.6493 0.1000 +GaussianMean1DRegression_dataSet = '-0.1437 -0.0982 -1.3616 -0.0171 -1.0290 0.7133 -0.5496 -0.2415 -0.0933 -0.0669 -0.2311 -1.5371 -0.7418 -0.2220 0.0209 1.6905 -0.8379 0.4233 1.7065 1.5676 0.1265 1.0728 1.8126 2.7186 -0.6680 0.5251 -0.4768 0.6027 -1.9304 -2.1159 1.8698 0.3908 -1.2513 1.2597 0.1426 -0.6527 -0.5948 -0.6698 0.3874 0.3455 -0.1988 -0.4574 0.6930 1.3184 -0.2715 -0.9510 0.3593 -0.4184 0.5243 0.2846 -0.3556 -1.4877 -0.8829 1.0829 -0.7700 -0.1138 0.6430 -0.7929 -1.6493 0.1000' diff --git a/test/test_Regression/adaptedcov_input.txt b/test/test_Regression/adaptedcov_input.txt index 70c60e9d3..c0b3a1900 100644 --- a/test/test_Regression/adaptedcov_input.txt +++ b/test/test_Regression/adaptedcov_input.txt @@ -3,7 +3,7 @@ ############################################### env_help = 1 env_numSubEnvironments = 1 -env_subDisplayFileName = test_adaptedcov_output/display +env_subDisplayFileName = 'test_adaptedcov_output/display' env_subDisplayAllowAll = 0 env_subDisplayAllowedSet = 0 env_displayVerbosity = 1000 @@ -13,25 +13,25 @@ env_seed = 0 ############################################### # Statistical inverse problem (ip) ############################################### -ip_help = anything +ip_help = 'anything' ip_computeSolution = 1 -ip_dataOutputFileName = test_adaptedcov_output/sipOutput +ip_dataOutputFileName = 'test_adaptedcov_output/sipOutput' ip_dataOutputAllowedSet = 0 ############################################### # 'ip_': information for Metropolis-Hastings algorithm ############################################### -ip_mh_help = anything -ip_mh_dataOutputFileName = test_adaptedcov_output/sipOutput -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_help = 'anything' +ip_mh_dataOutputFileName = 'test_adaptedcov_output/sipOutput' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 100000 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 2000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = test_adaptedcov_output/ip_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 +ip_mh_rawChain_dataOutputFileName = 'test_adaptedcov_output/ip_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1' ip_mh_rawChain_computeStats = 1 ip_mh_displayCandidates = 0 @@ -39,7 +39,7 @@ ip_mh_putOutOfBoundsInChain = 0 ip_mh_tk_useLocalHessian = 0 ip_mh_tk_useNewtonComponent = 0 ip_mh_dr_maxNumExtraStages = 0 -ip_mh_dr_listOfScalesForExtraStages = 5. 10. 20. +ip_mh_dr_listOfScalesForExtraStages = '5. 10. 20.' ip_mh_am_initialNonAdaptInterval = 10000 ip_mh_am_adaptInterval = 1000 ip_mh_am_eta = 0.384 diff --git a/test/test_StatisticalInverseProblem/both_input.txt b/test/test_StatisticalInverseProblem/both_input.txt index 058700abd..cf1c83ba2 100644 --- a/test/test_StatisticalInverseProblem/both_input.txt +++ b/test/test_StatisticalInverseProblem/both_input.txt @@ -3,7 +3,7 @@ ############################################### #env_help = anything env_numSubEnvironments = 1 -env_subDisplayFileName = test_outputBoth/display +env_subDisplayFileName = 'test_outputBoth/display' env_subDisplayAllowAll = 0 env_subDisplayAllowedSet = 0 env_displayVerbosity = 2 @@ -15,23 +15,23 @@ env_seed = 0 ############################################### #ip_help = anything ip_computeSolution = 1 -ip_dataOutputFileName = test_outputBoth/sipOutput +ip_dataOutputFileName = 'test_outputBoth/sipOutput' ip_dataOutputAllowedSet = 0 ############################################### # 'ip_': information for Metropolis-Hastings algorithm ############################################### #ip_mh_help = anything -ip_mh_dataOutputFileName = test_outputBoth/sipOutput -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_dataOutputFileName = 'test_outputBoth/sipOutput' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 10 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 50000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = test_outputBoth/ip_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 +ip_mh_rawChain_dataOutputFileName = 'test_outputBoth/ip_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1' ip_mh_rawChain_computeStats = 1 ip_mh_displayCandidates = 0 diff --git a/test/test_StatisticalInverseProblem/llhdout_input.txt b/test/test_StatisticalInverseProblem/llhdout_input.txt index 86c2434fb..9beddd1ab 100644 --- a/test/test_StatisticalInverseProblem/llhdout_input.txt +++ b/test/test_StatisticalInverseProblem/llhdout_input.txt @@ -3,7 +3,7 @@ ############################################### #env_help = anything env_numSubEnvironments = 1 -env_subDisplayFileName = test_outputLlhd/display +env_subDisplayFileName = 'test_outputLlhd/display' env_subDisplayAllowAll = 0 env_subDisplayAllowedSet = 0 env_displayVerbosity = 2 @@ -15,23 +15,23 @@ env_seed = 0 ############################################### #ip_help = anything ip_computeSolution = 1 -ip_dataOutputFileName = test_outputLlhd/sipOutput +ip_dataOutputFileName = 'test_outputLlhd/sipOutput' ip_dataOutputAllowedSet = 0 ############################################### # 'ip_': information for Metropolis-Hastings algorithm ############################################### #ip_mh_help = anything -ip_mh_dataOutputFileName = test_outputLlhd/sipOutput -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_dataOutputFileName = 'test_outputLlhd/sipOutput' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 10 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 50000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = test_outputLlhd/ip_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 +ip_mh_rawChain_dataOutputFileName = 'test_outputLlhd/ip_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1' ip_mh_rawChain_computeStats = 1 ip_mh_displayCandidates = 0 diff --git a/test/test_StatisticalInverseProblem/neither_input.txt b/test/test_StatisticalInverseProblem/neither_input.txt index c8a443714..e13fbe4d5 100644 --- a/test/test_StatisticalInverseProblem/neither_input.txt +++ b/test/test_StatisticalInverseProblem/neither_input.txt @@ -3,7 +3,7 @@ ############################################### #env_help = anything env_numSubEnvironments = 1 -env_subDisplayFileName = test_outputNeither/display +env_subDisplayFileName = 'test_outputNeither/display' env_subDisplayAllowAll = 0 env_subDisplayAllowedSet = 0 env_displayVerbosity = 2 @@ -15,23 +15,23 @@ env_seed = 0 ############################################### #ip_help = anything ip_computeSolution = 1 -ip_dataOutputFileName = test_outputNeither/sipOutput +ip_dataOutputFileName = 'test_outputNeither/sipOutput' ip_dataOutputAllowedSet = 0 ############################################### # 'ip_': information for Metropolis-Hastings algorithm ############################################### #ip_mh_help = anything -ip_mh_dataOutputFileName = test_outputNeither/sipOutput -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_dataOutputFileName = 'test_outputNeither/sipOutput' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 10 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 50000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = test_outputNeither/ip_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 +ip_mh_rawChain_dataOutputFileName = 'test_outputNeither/ip_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1' ip_mh_rawChain_computeStats = 1 ip_mh_displayCandidates = 0 diff --git a/test/test_StatisticalInverseProblem/targetout_input.txt b/test/test_StatisticalInverseProblem/targetout_input.txt index 9877973a3..5674618ca 100644 --- a/test/test_StatisticalInverseProblem/targetout_input.txt +++ b/test/test_StatisticalInverseProblem/targetout_input.txt @@ -3,7 +3,7 @@ ############################################### #env_help = anything env_numSubEnvironments = 1 -env_subDisplayFileName = test_outputTarget/display +env_subDisplayFileName = 'test_outputTarget/display' env_subDisplayAllowAll = 0 env_subDisplayAllowedSet = 0 env_displayVerbosity = 2 @@ -15,23 +15,23 @@ env_seed = 0 ############################################### #ip_help = anything ip_computeSolution = 1 -ip_dataOutputFileName = test_outputTarget/sipOutput +ip_dataOutputFileName = 'test_outputTarget/sipOutput' ip_dataOutputAllowedSet = 0 ############################################### # 'ip_': information for Metropolis-Hastings algorithm ############################################### #ip_mh_help = anything -ip_mh_dataOutputFileName = test_outputTarget/sipOutput -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_dataOutputFileName = 'test_outputTarget/sipOutput' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 10 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 50000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = test_outputTarget/ip_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 +ip_mh_rawChain_dataOutputFileName = 'test_outputTarget/ip_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1' ip_mh_rawChain_computeStats = 1 ip_mh_displayCandidates = 0 diff --git a/test/test_gaussian_likelihoods/gaussian_consistency_input.txt b/test/test_gaussian_likelihoods/gaussian_consistency_input.txt index 9d9e17f57..854ccb191 100644 --- a/test/test_gaussian_likelihoods/gaussian_consistency_input.txt +++ b/test/test_gaussian_likelihoods/gaussian_consistency_input.txt @@ -39,7 +39,7 @@ ip_mh_putOutOfBoundsInChain = 0 ip_mh_tk_useLocalHessian = 0 ip_mh_tk_useNewtonComponent = 0 ip_mh_dr_maxNumExtraStages = 0 -ip_mh_dr_listOfScalesForExtraStages = 5. 10. 20. +ip_mh_dr_listOfScalesForExtraStages = '5. 10. 20.' ip_mh_am_initialNonAdaptInterval = 10 ip_mh_am_adaptInterval = 1 ip_mh_am_eta = 0.384 diff --git a/test/test_gaussian_likelihoods/queso_input.txt b/test/test_gaussian_likelihoods/queso_input.txt index 2aea16d49..61305e710 100644 --- a/test/test_gaussian_likelihoods/queso_input.txt +++ b/test/test_gaussian_likelihoods/queso_input.txt @@ -3,7 +3,7 @@ ############################################### env_help = 1 env_numSubEnvironments = 1 -env_subDisplayFileName = test_output_gaussian_likelihoods/display +env_subDisplayFileName = 'test_output_gaussian_likelihoods/display' env_subDisplayAllowAll = 0 env_subDisplayAllowedSet = 0 env_displayVerbosity = 1000 @@ -13,25 +13,25 @@ env_seed = 0 ############################################### # Statistical inverse problem (ip) ############################################### -ip_help = anything +ip_help = 'anything' ip_computeSolution = 1 -ip_dataOutputFileName = test_output_gaussian_likelihoods/sipOutput +ip_dataOutputFileName = 'test_output_gaussian_likelihoods/sipOutput' ip_dataOutputAllowedSet = 0 ############################################### # 'ip_': information for Metropolis-Hastings algorithm ############################################### -ip_mh_help = anything -ip_mh_dataOutputFileName = test_output_gaussian_likelihoods/sipOutput -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_help = 'anything' +ip_mh_dataOutputFileName = 'test_output_gaussian_likelihoods/sipOutput' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 1 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 2000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = test_output_gaussian_likelihoods/ip_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 +ip_mh_rawChain_dataOutputFileName = 'test_output_gaussian_likelihoods/ip_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1' ip_mh_rawChain_computeStats = 1 ip_mh_displayCandidates = 0 @@ -39,7 +39,7 @@ ip_mh_putOutOfBoundsInChain = 0 ip_mh_tk_useLocalHessian = 0 ip_mh_tk_useNewtonComponent = 0 ip_mh_dr_maxNumExtraStages = 0 -ip_mh_dr_listOfScalesForExtraStages = 5. 10. 20. +ip_mh_dr_listOfScalesForExtraStages = '5. 10. 20.' ip_mh_am_initialNonAdaptInterval = 10 ip_mh_am_adaptInterval = 1 ip_mh_am_eta = 0.384 diff --git a/test/test_gpmsa/gpmsa_vector_input.txt b/test/test_gpmsa/gpmsa_vector_input.txt index a2942712f..ba5cf8058 100644 --- a/test/test_gpmsa/gpmsa_vector_input.txt +++ b/test/test_gpmsa/gpmsa_vector_input.txt @@ -3,7 +3,7 @@ ############################################### #env_help = anything env_numSubEnvironments = 1 -env_subDisplayFileName = test_gpmsa_vector_output/display +env_subDisplayFileName = 'test_gpmsa_vector_output/display' env_subDisplayAllowAll = 0 env_subDisplayAllowedSet = 0 env_displayVerbosity = 2 @@ -15,23 +15,23 @@ env_seed = -1 ############################################### #ip_help = anything ip_computeSolution = 1 -ip_dataOutputFileName = test_gpmsa_vector_output/sipOutput +ip_dataOutputFileName = 'test_gpmsa_vector_output/sipOutput' ip_dataOutputAllowedSet = 0 ############################################### # 'ip_': information for Metropolis-Hastings algorithm ############################################### #ip_mh_help = anything -ip_mh_dataOutputFileName = test_gpmsa_vector_output/sipOutput -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_dataOutputFileName = 'test_gpmsa_vector_output/sipOutput' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 1000 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 2000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = test_gpmsa_vector_output/ip_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 +ip_mh_rawChain_dataOutputFileName = 'test_gpmsa_vector_output/ip_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1' ip_mh_rawChain_computeStats = 1 ip_mh_displayCandidates = 0 @@ -39,7 +39,7 @@ ip_mh_putOutOfBoundsInChain = 0 ip_mh_tk_useLocalHessian = 0 ip_mh_tk_useNewtonComponent = 0 ip_mh_dr_maxNumExtraStages = 0 -ip_mh_dr_listOfScalesForExtraStages = 5. 10. 20. +ip_mh_dr_listOfScalesForExtraStages = '5. 10. 20.' ip_mh_am_initialNonAdaptInterval = 1000 ip_mh_am_adaptInterval = 100000 ip_mh_am_eta = 0.384 diff --git a/test/test_infinite/inf_options b/test/test_infinite/inf_options index fd00ccb81..e8902ed4b 100644 --- a/test/test_infinite/inf_options +++ b/test/test_infinite/inf_options @@ -5,10 +5,10 @@ env_subDisplayAllowedSet = 1 env_displayVerbosity = 0 env_syncVerbosity = 0 env_checkingLevel = 1 -env_rngType = gsl +env_rngType = 'gsl' env_seed = 1 -env_platformName = my_platform -env_identifyingString = my_identifying_string +env_platformName = 'my_platform' +env_identifyingString = 'my_identifying_string' infmcmc_num_iters = 10 infmcmc_save_freq = 5 infmcmc_rwmh_step = 0.1 diff --git a/test/test_intercomm0/gravity_1proc.txt b/test/test_intercomm0/gravity_1proc.txt index d9fc7612f..3d6de221c 100644 --- a/test/test_intercomm0/gravity_1proc.txt +++ b/test/test_intercomm0/gravity_1proc.txt @@ -2,9 +2,9 @@ # UQ Environment ############################################### env_numSubEnvironments = 1 -env_subDisplayFileName = output_test_intercomm0_gravity_1/display_env +env_subDisplayFileName = 'output_test_intercomm0_gravity_1/display_env' env_subDisplayAllowAll = 0 -env_subDisplayAllowedSet = 0 1 2 3 4 5 6 7 +env_subDisplayAllowedSet = '0 1 2 3 4 5 6 7' env_displayVerbosity = 2 env_seed = -1 @@ -12,27 +12,27 @@ env_seed = -1 # Statistical inverse problem (ip) ############################################### ip_computeSolution = 1 -ip_dataOutputFileName = output_test_intercomm0_gravity_1/sip_gravity -ip_dataOutputAllowedSet = 0 1 +ip_dataOutputFileName = 'output_test_intercomm0_gravity_1/sip_gravity' +ip_dataOutputAllowedSet = '0 1' ############################################### # Information for Metropolis-Hastings algorithm ############################################### -ip_mh_dataOutputFileName = output_test_intercomm0_gravity_1/sip_gravity -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_dataOutputFileName = 'output_test_intercomm0_gravity_1/sip_gravity' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 20000 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 2000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = output_test_intercomm0_gravity_1/sip_gravity_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 2 3 4 5 6 7 +ip_mh_rawChain_dataOutputFileName = 'output_test_intercomm0_gravity_1/sip_gravity_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1 2 3 4 5 6 7' ip_mh_displayCandidates = 0 ip_mh_putOutOfBoundsInChain = 0 ip_mh_dr_maxNumExtraStages = 3 -ip_mh_dr_listOfScalesForExtraStages = 5. 10. 20. +ip_mh_dr_listOfScalesForExtraStages = '5. 10. 20.' ip_mh_am_initialNonAdaptInterval = 0 ip_mh_am_adaptInterval = 100 ip_mh_am_eta = 1.98 #(2.4^2)/d, d is the dimension of the problem @@ -41,33 +41,33 @@ ip_mh_am_epsilon = 1.e-5 ip_mh_filteredChain_generate = 1 ip_mh_filteredChain_discardedPortion = 0. ip_mh_filteredChain_lag = 20 -ip_mh_filteredChain_dataOutputFileName = output_test_intercomm0_gravity_1/sip_gravity_filtered_chain -ip_mh_filteredChain_dataOutputAllowedSet = 0 1 +ip_mh_filteredChain_dataOutputFileName = 'output_test_intercomm0_gravity_1/sip_gravity_filtered_chain' +ip_mh_filteredChain_dataOutputAllowedSet = '0 1' ############################################### # Statistical forward problem (fp) ############################################### -fp_help = anything +fp_help = 'anything' fp_computeSolution = 1 fp_computeCovariances = 1 fp_computeCorrelations = 1 -fp_dataOutputFileName = output_test_intercomm0_gravity_1/sfp_gravity -fp_dataOutputAllowedSet = 0 1 +fp_dataOutputFileName = 'output_test_intercomm0_gravity_1/sfp_gravity' +fp_dataOutputAllowedSet = '0 1' ############################################### # 'fp_': information for Monte Carlo algorithm ############################################### -fp_mc_help = anything -fp_mc_dataOutputFileName = output_test_intercomm0_gravity_1/sfp_gravity -fp_mc_dataOutputAllowedSet = 0 1 +fp_mc_help = 'anything' +fp_mc_dataOutputFileName = 'output_test_intercomm0_gravity_1/sfp_gravity' +fp_mc_dataOutputAllowedSet = '0 1' -fp_mc_pseq_dataOutputFileName = output_test_intercomm0_gravity_1/sfp_gravity_p_seq -fp_mc_pseq_dataOutputAllowedSet = 0 1 +fp_mc_pseq_dataOutputFileName = 'output_test_intercomm0_gravity_1/sfp_gravity_p_seq' +fp_mc_pseq_dataOutputAllowedSet = '0 1' fp_mc_qseq_dataInputFileName = . fp_mc_qseq_size = 16384 fp_mc_qseq_displayPeriod = 20000 fp_mc_qseq_measureRunTimes = 1 -fp_mc_qseq_dataOutputFileName = output_test_intercomm0_gravity_1/sfp_gravity_qoi_seq -fp_mc_qseq_dataOutputAllowedSet = 0 1 +fp_mc_qseq_dataOutputFileName = 'output_test_intercomm0_gravity_1/sfp_gravity_qoi_seq' +fp_mc_qseq_dataOutputAllowedSet = '0 1' diff --git a/test/test_intercomm0/gravity_2proc.txt b/test/test_intercomm0/gravity_2proc.txt index 93c019c1d..4368508ec 100644 --- a/test/test_intercomm0/gravity_2proc.txt +++ b/test/test_intercomm0/gravity_2proc.txt @@ -2,9 +2,9 @@ # UQ Environment ############################################### env_numSubEnvironments = 1 -env_subDisplayFileName = output_test_intercomm0_gravity_2/display_env +env_subDisplayFileName = 'output_test_intercomm0_gravity_2/display_env' env_subDisplayAllowAll = 0 -env_subDisplayAllowedSet = 0 1 2 3 4 5 6 7 +env_subDisplayAllowedSet = '0 1 2 3 4 5 6 7' env_displayVerbosity = 2 env_seed = -1 @@ -12,27 +12,27 @@ env_seed = -1 # Statistical inverse problem (ip) ############################################### ip_computeSolution = 1 -ip_dataOutputFileName = output_test_intercomm0_gravity_2/sip_gravity -ip_dataOutputAllowedSet = 0 1 +ip_dataOutputFileName = 'output_test_intercomm0_gravity_2/sip_gravity' +ip_dataOutputAllowedSet = '0 1' ############################################### # Information for Metropolis-Hastings algorithm ############################################### -ip_mh_dataOutputFileName = output_test_intercomm0_gravity_2/sip_gravity -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_dataOutputFileName = 'output_test_intercomm0_gravity_2/sip_gravity' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 20000 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 2000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = output_test_intercomm0_gravity_2/sip_gravity_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 2 3 4 5 6 7 +ip_mh_rawChain_dataOutputFileName = 'output_test_intercomm0_gravity_2/sip_gravity_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1 2 3 4 5 6 7' ip_mh_displayCandidates = 0 ip_mh_putOutOfBoundsInChain = 0 ip_mh_dr_maxNumExtraStages = 3 -ip_mh_dr_listOfScalesForExtraStages = 5. 10. 20. +ip_mh_dr_listOfScalesForExtraStages = '5. 10. 20.' ip_mh_am_initialNonAdaptInterval = 0 ip_mh_am_adaptInterval = 100 ip_mh_am_eta = 1.98 #(2.4^2)/d, d is the dimension of the problem @@ -41,33 +41,33 @@ ip_mh_am_epsilon = 1.e-5 ip_mh_filteredChain_generate = 1 ip_mh_filteredChain_discardedPortion = 0. ip_mh_filteredChain_lag = 20 -ip_mh_filteredChain_dataOutputFileName = output_test_intercomm0_gravity_2/sip_gravity_filtered_chain -ip_mh_filteredChain_dataOutputAllowedSet = 0 1 +ip_mh_filteredChain_dataOutputFileName = 'output_test_intercomm0_gravity_2/sip_gravity_filtered_chain' +ip_mh_filteredChain_dataOutputAllowedSet = '0 1' ############################################### # Statistical forward problem (fp) ############################################### -fp_help = anything +fp_help = 'anything' fp_computeSolution = 1 fp_computeCovariances = 1 fp_computeCorrelations = 1 -fp_dataOutputFileName = output_test_intercomm0_gravity_2/sfp_gravity -fp_dataOutputAllowedSet = 0 1 +fp_dataOutputFileName = 'output_test_intercomm0_gravity_2/sfp_gravity' +fp_dataOutputAllowedSet = '0 1' ############################################### # 'fp_': information for Monte Carlo algorithm ############################################### -fp_mc_help = anything -fp_mc_dataOutputFileName = output_test_intercomm0_gravity_2/sfp_gravity -fp_mc_dataOutputAllowedSet = 0 1 +fp_mc_help = 'anything' +fp_mc_dataOutputFileName = 'output_test_intercomm0_gravity_2/sfp_gravity' +fp_mc_dataOutputAllowedSet = '0 1' -fp_mc_pseq_dataOutputFileName = output_test_intercomm0_gravity_2/sfp_gravity_p_seq -fp_mc_pseq_dataOutputAllowedSet = 0 1 +fp_mc_pseq_dataOutputFileName = 'output_test_intercomm0_gravity_2/sfp_gravity_p_seq' +fp_mc_pseq_dataOutputAllowedSet = '0 1' fp_mc_qseq_dataInputFileName = . fp_mc_qseq_size = 16384 fp_mc_qseq_displayPeriod = 20000 fp_mc_qseq_measureRunTimes = 1 -fp_mc_qseq_dataOutputFileName = output_test_intercomm0_gravity_2/sfp_gravity_qoi_seq -fp_mc_qseq_dataOutputAllowedSet = 0 1 +fp_mc_qseq_dataOutputFileName = 'output_test_intercomm0_gravity_2/sfp_gravity_qoi_seq' +fp_mc_qseq_dataOutputAllowedSet = '0 1' diff --git a/test/test_optimizer/input_test_optimizer_input_parameters b/test/test_optimizer/input_test_optimizer_input_parameters index 52bb4f945..b53267eca 100644 --- a/test/test_optimizer/input_test_optimizer_input_parameters +++ b/test/test_optimizer/input_test_optimizer_input_parameters @@ -3,7 +3,7 @@ ############################################### #env_help = anything env_numSubEnvironments = 1 -env_subDisplayFileName = output_test_optimizer_options/display +env_subDisplayFileName = 'output_test_optimizer_options/display' env_subDisplayAllowAll = 0 env_subDisplayAllowedSet = 0 env_displayVerbosity = 2 @@ -15,7 +15,7 @@ env_seed = 0 ############################################### #ip_help = anything ip_computeSolution = 1 -ip_dataOutputFileName = output_test_optimizer_options/sipOutput +ip_dataOutputFileName = 'output_test_optimizer_options/sipOutput' ip_dataOutputAllowedSet = 0 ip_seedWithMAPEstimator = 1 ip_useOptimizerMonitor = 1 @@ -29,16 +29,16 @@ optimizer_tolerance = 3.0 # 'ip_': information for Metropolis-Hastings algorithm ############################################### #ip_mh_help = anything -ip_mh_dataOutputFileName = output_test_optimizer_options/sipOutput -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_dataOutputFileName = 'output_test_optimizer_options/sipOutput' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 10 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 50000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = output_test_optimizer_options/ip_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 +ip_mh_rawChain_dataOutputFileName = 'output_test_optimizer_options/ip_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1' ip_mh_rawChain_computeStats = 1 ip_mh_displayCandidates = 0 diff --git a/test/test_optimizer/input_test_optimizer_options b/test/test_optimizer/input_test_optimizer_options index 361e7620a..482c6500d 100644 --- a/test/test_optimizer/input_test_optimizer_options +++ b/test/test_optimizer/input_test_optimizer_options @@ -3,7 +3,7 @@ ############################################### #env_help = anything env_numSubEnvironments = 1 -env_subDisplayFileName = output_test_optimizer_options/display +env_subDisplayFileName = 'output_test_optimizer_options/display' env_subDisplayAllowAll = 0 env_subDisplayAllowedSet = 0 env_displayVerbosity = 2 @@ -15,7 +15,7 @@ env_seed = 0 ############################################### #ip_help = anything ip_computeSolution = 1 -ip_dataOutputFileName = output_test_optimizer_options/sipOutput +ip_dataOutputFileName = 'output_test_optimizer_options/sipOutput' ip_dataOutputAllowedSet = 0 ip_seedWithMAPEstimator = 1 ip_useOptimizerMonitor = 1 @@ -24,16 +24,16 @@ ip_useOptimizerMonitor = 1 # 'ip_': information for Metropolis-Hastings algorithm ############################################### #ip_mh_help = anything -ip_mh_dataOutputFileName = output_test_optimizer_options/sipOutput -ip_mh_dataOutputAllowedSet = 0 1 +ip_mh_dataOutputFileName = 'output_test_optimizer_options/sipOutput' +ip_mh_dataOutputAllowedSet = '0 1' ip_mh_rawChain_dataInputFileName = . ip_mh_rawChain_size = 10 ip_mh_rawChain_generateExtra = 0 ip_mh_rawChain_displayPeriod = 50000 ip_mh_rawChain_measureRunTimes = 1 -ip_mh_rawChain_dataOutputFileName = output_test_optimizer_options/ip_raw_chain -ip_mh_rawChain_dataOutputAllowedSet = 0 1 +ip_mh_rawChain_dataOutputFileName = 'output_test_optimizer_options/ip_raw_chain' +ip_mh_rawChain_dataOutputAllowedSet = '0 1' ip_mh_rawChain_computeStats = 1 ip_mh_displayCandidates = 0