NAMESPACE

# Generated by roxygen2: do not edit by hand

export("%>%")
export(calKaKs)
export(calPropDriver)
export(calRoutines)
export(getClinSites)
export(getKaKs)
export(inferClonalTrees)
export(maf2variants)
export(plotCNA)
export(plotCNAProfile)
export(plotCNAtree)
export(plotMutTree)
export(plotVafCluster)
export(readCNAProfile)
export(readMaf)
export(set.colors)
export(splitSegment)
export(tree2timescape)
export(viewTrees)
exportClasses(Seg)
import(CNAqc)
import(ComplexHeatmap)
import(GenomicRanges)
import(ape)
import(clonevol)
import(ggrepel)
import(ggtree)
import(methods)
import(phangorn)
import(treeio)
importFrom(data.table,":=")
importFrom(data.table,.BY)
importFrom(data.table,.EACHI)
importFrom(data.table,.GRP)
importFrom(data.table,.I)
importFrom(data.table,.N)
importFrom(data.table,.NGRP)
importFrom(data.table,.SD)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,setkey)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(magrittr,"%>%")
importFrom(methods,new)
importFrom(stats,as.dist)
importFrom(stats,qnorm)
importFrom(stats,rnorm)
importFrom(stats,setNames)
importFrom(utils,data)
importFrom(utils,read.delim)
importFrom(utils,read.table)
importFrom(utils,write.table)