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usefulLDfunctionsGR

Functions That I Use Regularly Which depends on GenomicRanges

Installation

This package depends on GenomicRanges, BiocGenerics, rtracklayer, usefulLDfunctions, stats, grDevices, utils, combinat. If usefulLDfunctions, and/or GenomicRanges and/or rtracklayer and/or combinat are not installed on your R see Installation of dependencies section.

The easiest way to install usefulLDfunctions is using devtools::install_github() from R:

if (!"devtools" %in% installed.packages()){
    install.packages("devtools", repos = "https://stat.ethz.ch/CRAN/")
}
devtools::install_github("lldelisle/usefulLDfunctionsGR")

Installation of dependencies

usefulLDfunctions is another R package I wrote which is on github too. So to install it:

if (!"devtools" %in% installed.packages()){
    install.packages("devtools", repos = "https://stat.ethz.ch/CRAN/")
}
devtools::install_github("lldelisle/usefulLDfunctions")

As the installation of Bioconductor package depends on the R version you have, I recommend you to use the function safelyLoadAPackageInCRANorBioconductor from the usefulLDfunctions package:

library(usefulLDfunctions)
safelyLoadAPackageInCRANorBioconductor("GenomicRanges")
safelyLoadAPackageInCRANorBioconductor("rtracklayer")
safelyLoadAPackageInCRANorBioconductor("combinat")
safelyLoadAPackageInCRANorBioconductor("BiocGenerics")

Issues

If you have issues, use the Issues in github or send an email to lucille.delisle@epfl.ch