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Dear developers, thank you very much for developing the pytorch version of enformer!
However, when I use the example data provided by basenji and my own ATAC-Seq dataset, the predictive power of pytorch-enformer compared to the predictive power of tensorflow-enformer (referring to the Pearson correlation coefficient) drops by around 0.2, (0.3 vs 0.5 for the validation set) . I tried to initialize my model weights following the weight initialization method of the tensorflow-enformer, but things didn't get radically better, can anyone tell me why?
Best,
Eli
The text was updated successfully, but these errors were encountered:
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The pytorch version of enformer has much lower performance than the tensorflow version of enformer
The pytorch-enformer has much lower performance than the tensorflow-enformer
Jul 18, 2024
Dear developers, thank you very much for developing the pytorch version of enformer!
However, when I use the example data provided by basenji and my own ATAC-Seq dataset, the predictive power of pytorch-enformer compared to the predictive power of tensorflow-enformer (referring to the Pearson correlation coefficient) drops by around 0.2, (0.3 vs 0.5 for the validation set) . I tried to initialize my model weights following the weight initialization method of the tensorflow-enformer, but things didn't get radically better, can anyone tell me why?
Best,
Eli
The text was updated successfully, but these errors were encountered: