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gsll.asd
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;; Definition of GSLL system
;; Liam Healy
;; Time-stamp: <2009-09-19 18:54:29EDT gsll.asd>
(when (asdf:find-system :fsbv nil)
(pushnew :fsbv *features*))
(eval-when (:compile-toplevel :load-toplevel :execute)
(asdf:oos 'asdf:load-op :cffi-grovel))
(asdf:defsystem "gsll"
:name "gsll"
:description "GNU Scientific Library for Lisp."
:version "0"
:author "Liam M. Healy"
:licence "LLGPL v3, FDL"
:depends-on (cffi cffi-grovel trivial-garbage cl-utilities #+fsbv fsbv)
:components
((:module init
:components
((:file "init")
(cffi-grovel:grovel-file "libgsl" :pathname #+unix "libgsl-unix")
(:file "utility")
(:file "forms")
(:file "conditions" :depends-on ("init" "libgsl"))
(:file "number-conversion" :depends-on ("init" "libgsl"))
(:file "callback-compile-defs" :depends-on ("init"))
(:file "mobject" :depends-on ("init" "callback-compile-defs"))
(:file "callback-included" :depends-on ("mobject"))
(:file "callback"
:depends-on
("init" "utility" "forms" "number-conversion"
"callback-included"))
(:file "types" :depends-on ("init" "libgsl"))
(cffi-grovel:grovel-file "callback-struct"
:depends-on ("types" "libgsl"))
(:file "funcallable" :depends-on ("utility"))
(:file "complex-types" :depends-on ("types"))
(:file "element-types" :depends-on ("init" "complex-types"))
(:file "interface"
:depends-on ("init" "conditions" "element-types"
"number-conversion"))
(:file "defmfun"
:depends-on ("init" "forms" "element-types" "interface"))
(:file "defmfun-array"
:depends-on ("defmfun" "callback-included"))
(:file "defmfun-single"
:depends-on ("defmfun" "mobject" "callback"))
(:file "body-expand" :depends-on ("defmfun" "mobject" "callback"))
(:file "generate-examples" :depends-on ("init"))))
(:module floating-point
:depends-on (init)
:components
((:file "ieee-modes")
(:file "floating-point")))
(:module mathematical
:depends-on (init)
:components
((:file "mathematical")
#+fsbv
(:file "complex")))
(:module data
:depends-on (init)
:components
((:file "foreign-friendly")
(:file "foreign-array" :depends-on ("foreign-friendly"))
(cffi-grovel:grovel-file "array-structs")
(:file "marray" :depends-on ("foreign-array" "array-structs"))
(:file "vector" :depends-on ("marray" "array-structs"))
(:file "matrix" :depends-on ("marray" "vector" "array-structs"))
(:file "maref" :depends-on ("marray" "vector" "matrix"))
(:file "both" :depends-on ("marray" "vector" "matrix"))
(:file "copy-cl")
(:file "array-tests" :depends-on ("both"))
(:file "permutation" :depends-on ("marray" "array-structs"))
(:file "combination" :depends-on ("marray" "array-structs"))))
(:file "polynomial" :depends-on (init data))
(:module special-functions
:depends-on (init)
:components
((cffi-grovel:grovel-file "sf-result")
(:file "return-structures" :depends-on ("sf-result"))
(:file "airy" :depends-on ("return-structures"))
(:file "bessel" :depends-on ("return-structures"))
(:file "clausen" :depends-on ("return-structures"))
(:file "coulomb" :depends-on ("return-structures"))
(:file "coupling" :depends-on ("return-structures"))
(:file "dawson" :depends-on ("return-structures"))
(:file "debye" :depends-on ("return-structures"))
(:file "dilogarithm" :depends-on ("return-structures"))
(:file "elementary" :depends-on ("return-structures"))
(:file "elliptic-integrals" :depends-on ("return-structures"))
(:file "elliptic-functions" :depends-on ("return-structures"))
(:file "error-functions" :depends-on ("return-structures"))
(:file "exponential-functions" :depends-on ("return-structures"))
(:file "exponential-integrals" :depends-on ("return-structures"))
(:file "fermi-dirac" :depends-on ("return-structures"))
(:file "gamma" :depends-on ("return-structures"))
(:file "gegenbauer" :depends-on ("return-structures"))
(:file "hypergeometric" :depends-on ("return-structures"))
(:file "laguerre" :depends-on ("return-structures"))
(:file "lambert" :depends-on ("return-structures"))
(:file "legendre" :depends-on ("return-structures"))
(:file "logarithm" :depends-on ("return-structures"))
(:file "mathieu" :depends-on ("return-structures"))
(:file "power" :depends-on ("return-structures"))
(:file "psi" :depends-on ("return-structures"))
(:file "synchrotron" :depends-on ("return-structures"))
(:file "transport" :depends-on ("return-structures"))
(:file "trigonometry" :depends-on ("return-structures"))
(:file "zeta" :depends-on ("return-structures"))))
(:file "sorting" :depends-on (init data))
(:module linear-algebra
:depends-on (init data special-functions)
:components
((:file "blas1")
(:file "blas2")
(:file "blas3" :depends-on ("blas2"))
(:file "matrix-generation")
(:file "exponential")
(:file "lu")
(:file "qr")
(:file "qrpt")
(:file "svd")
(:file "cholesky")
(:file "diagonal")
(:file "householder")))
(:module eigensystems
:depends-on (init data)
:components
((:file "symmetric-hermitian")
(cffi-grovel:grovel-file "eigen-struct")
(:file "nonsymmetric" :depends-on ("eigen-struct"))
(:file "generalized")
(:file "nonsymmetric-generalized")))
;; Skip fft for now, I'm not sure how it works in C
(:module random
:depends-on (init data)
:components
((:file "rng-types")
(:file "generators" :depends-on ("rng-types"))
(:file "quasi" :depends-on ("rng-types" "generators"))
(:file "gaussian" :depends-on ("rng-types"))
(:file "gaussian-tail" :depends-on ("rng-types"))
(:file "gaussian-bivariate" :depends-on ("rng-types"))
(:file "exponential" :depends-on ("rng-types"))
(:file "laplace" :depends-on ("rng-types"))
(:file "exponential-power" :depends-on ("rng-types"))
(:file "cauchy" :depends-on ("rng-types"))
(:file "rayleigh" :depends-on ("rng-types"))
(:file "rayleigh-tail" :depends-on ("rng-types"))
(:file "landau" :depends-on ("rng-types"))
(:file "levy" :depends-on ("rng-types"))
(:file "gamma" :depends-on ("rng-types"))
(:file "flat" :depends-on ("rng-types"))
(:file "lognormal" :depends-on ("rng-types"))
(:file "chi-squared" :depends-on ("rng-types"))
(:file "fdist" :depends-on ("rng-types"))
(:file "tdist" :depends-on ("rng-types"))
(:file "beta" :depends-on ("rng-types"))
(:file "logistic" :depends-on ("rng-types"))
(:file "pareto" :depends-on ("rng-types"))
(:file "spherical-vector" :depends-on ("rng-types"))
(:file "weibull" :depends-on ("rng-types"))
(:file "gumbel1" :depends-on ("rng-types"))
(:file "gumbel2" :depends-on ("rng-types"))
(:file "dirichlet" :depends-on ("rng-types"))
(:file "discrete" :depends-on ("rng-types"))
(:file "poisson" :depends-on ("rng-types"))
(:file "bernoulli" :depends-on ("rng-types"))
(:file "binomial" :depends-on ("rng-types"))
(:file "multinomial" :depends-on ("rng-types"))
(:file "negative-binomial" :depends-on ("rng-types"))
(:file "geometric" :depends-on ("rng-types"))
(:file "hypergeometric" :depends-on ("rng-types"))
(:file "logarithmic" :depends-on ("rng-types"))
(:file "shuffling-sampling" :depends-on ("rng-types"))))
(:module statistics
:depends-on (init data)
:components
((:file "mean-variance")
(:file "absolute-deviation")
(:file "higher-moments")
(:file "autocorrelation")
(:file "covariance")
;; minimum and maximum values provided in vector.lisp
(:file "median-percentile")))
(:module histogram
:depends-on (init linear-algebra random)
:components
((:file "histogram")
(:file "updating-accessing" :depends-on ("histogram"))
(:file "statistics" :depends-on ("histogram"))
(:file "operations" :depends-on ("histogram"))
(:file "probability-distribution" :depends-on ("histogram"))
(:file "ntuple")))
(:module calculus
:depends-on (init data random)
:components
((:file "numerical-integration")
(:file "numerical-integration-with-tables"
:depends-on ("numerical-integration"))
(cffi-grovel:grovel-file "monte-carlo-structs")
(:file "monte-carlo")
(:file "numerical-differentiation")))
(:module ordinary-differential-equations
:depends-on (init)
:components
((:file "ode-system")
(cffi-grovel:grovel-file "ode-struct")
(:file "stepping" :depends-on ("ode-struct"))
(:file "control")
(:file "evolution")
(:file "ode-example" :depends-on ("ode-system" "stepping"))))
(:module interpolation
:depends-on (init)
:components
((:file "interpolation")
(:file "types" :depends-on ("interpolation"))
(:file "lookup")
(:file "evaluation")
(:file "spline-example" :depends-on ("types"))))
(:file "chebyshev" :depends-on (init))
(cffi-grovel:grovel-file "series-struct")
(:file "series-acceleration" :depends-on (init "series-struct"))
(:file "wavelet" :depends-on (init data))
(:file "hankel" :depends-on (init data))
(:module solve-minimize-fit
:depends-on (init data random)
:components
((:file "generic")
(cffi-grovel:grovel-file "solver-struct")
(:file "roots-one" :depends-on ("generic"))
(:file "minimization-one" :depends-on ("generic"))
(:file "roots-multi" :depends-on ("roots-one" "generic" "solver-struct"))
(:file "minimization-multi" :depends-on ("generic"))
(:file "linear-least-squares")
(:file "nonlinear-least-squares"
:depends-on ("generic" "solver-struct"))
#+fsbv
(:file "simulated-annealing")))
(:file "basis-splines" :depends-on (init data random))
(:module physical-constants
:components
((cffi-grovel:grovel-file "mksa")
(cffi-grovel:grovel-file "cgsm")
(:file export)))))
#+asdf-system-connections
(asdf:defsystem-connection gsll-iterate-extension
:requires (gsll iterate)
:components ((:module
"gsll-iterate"
:pathname "data/"
:components ((:file "iterate")))))