From 512bbbe28fce6f3ce961545f999f0e8b914a822a Mon Sep 17 00:00:00 2001
From: Brian Ondov <brian.ondov@nih.gov>
Date: Mon, 30 Jul 2018 10:23:04 -0400
Subject: [PATCH] nvm, hard cap dist at 1 instead

---
 src/mash/CommandDistance.cpp | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/src/mash/CommandDistance.cpp b/src/mash/CommandDistance.cpp
index 443cec1..5e17947 100644
--- a/src/mash/CommandDistance.cpp
+++ b/src/mash/CommandDistance.cpp
@@ -383,9 +383,14 @@ void compareSketches(CommandDistance::CompareOutput::PairOutput * output, const
     {
         //distance = log(double(common + 1) / (denom + 1)) / log(1. / (denom + 1));
         distance = -log(2 * jaccard / (1. + jaccard)) / kmerSize;
+        
+        if ( distance > 1 )
+        {
+        	distance = 1;
+        }
     }
     
-    if ( distance > maxDistance && maxDistance < 1. )
+    if ( distance > maxDistance )
     {
         return;
     }