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Output missing large sections of sequence. #20

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lkavan2 opened this issue Jul 27, 2023 · 0 comments
Open

Output missing large sections of sequence. #20

lkavan2 opened this issue Jul 27, 2023 · 0 comments

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@lkavan2
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lkavan2 commented Jul 27, 2023

Screen Shot 2023-07-26 at 5 28 07 PM

Input reference is a .gbff file from NCBI and the input sequences are 100 .fna files from NCBI. I do not experience any errors in running parsnp on the command line. Additionally, I checked to make sure that all of the strains were (reasonably) related and they all shared 97-100% identity. Further, I checked the annotated file for the regions missing and they are present in the .gbff file.
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