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use meryl #18

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duhuipeng opened this issue Feb 20, 2021 · 1 comment

duhuipeng commented Feb 20, 2021

Dear author

meryl if there are parameters, can retrieve the reads where the kmer is located

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arangrhie commented Feb 20, 2021

Hello,

I am not sure if I understood your question. Are you looking for a parameter that retrieves where a specific kmer is located in a read?

If this is the case, use meryl-lookup -dump. -sequence can be a read, fasta or fastq. -mers needs a meryl db, built with meryl count.

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