README.md

ra_overlap

usage: ra_overlap -i <reads file> [arguments ...]

arguments:
    -i, --reads <file>
        (required)
        input afg reads file
    -t, --threads <int>
        default: approx. number of processors/cores
        number of threads used
    -m, --min-overlap-length <int>
        default: 5
        minimal length of exact overlap between two reads
    --reads-out <file>
        default: reads.afg
        output afg updated reads file
    -o, --out <file>
        default: cout
        output afg overlaps file
    -h, -help
        prints out the help