DESCRIPTION

Package: DAMEfinder
Type: Package
Title: Finds DAMEs - Differential Allelicly MEthylated regions
Version: 1.11.2
Authors@R: c(person("Stephany", "Orjuela", role = c("aut", "cre"), 
           email = "sorjuelal@gmail.com", comment = c(ORCID = "0000-0002-1508-461X")),
             person("Dania", "Machlab", role = "aut", email = "dania.machlab@gmail.com"),
             person("Mark", "Robinson", role = "aut", email = "mark.robinson@imls.uzh.ch"))
Description: 'DAMEfinder' offers functionality for taking methtuple or bismark 
        outputs to calculate ASM scores and compute DAMEs. 
        It also offers nice visualization of methyl-circle plots.
License: MIT + file LICENSE
LazyData: FALSE
RoxygenNote: 7.2.2
biocViews: DNAMethylation, DifferentialMethylation, Coverage
Depends: R (>= 4.0)
Imports:
  stats, 
  GenomeInfoDb, 
  GenomicRanges, 
  IRanges,
  S4Vectors, 
  readr, 
  SummarizedExperiment, 
  GenomicAlignments,
  stringr,
  plyr,
  VariantAnnotation,
  parallel,
  ggplot2,
  Rsamtools,
  BiocGenerics,
  methods,
  limma, 
  bumphunter,
  Biostrings,
  reshape2,
  cowplot,
  utils
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown,
    testthat, rtracklayer, BSgenome.Hsapiens.UCSC.hg19
BugReports: https://github.com/markrobinsonuzh/DAMEfinder/issues