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Project 31: Deploying biocontainers in orchestration environments for life science research

Abstract

Packaging tools in containers is becoming a common practice in bioinformatics to ensure reproducible research. However, usage of orchestration platforms, such as Kubernetes, is in the community not yet broadly adopted. EOSC-Life is planning to provide such environments as part of the compute resources, which implies we need to enable developers to take advantage of them. In this Hackathon depending on the knowledge of participants we will start with introducing Kubernetes and helm charts environments for biocontainers by deploying some sample containers. We will also see minimal ...

Topics

Compute Platfrom Containers EOSC-life Galaxy Tools Platform

Project Number: 31

EasyChair Number: 50

Team

Lead(s)

Kiran K Telukunta kiran.telukunta@psb.vib-ugent.be

Nominated participant(s)

Pablo Morenopmoreno@ebi.ac.uk Expression Atlas Data Production Project Lead Nuwan Goonasekeranuwan.goonasekera@unimelb.edu.au

Expected outcomes

  • Guidelines and specifications to run containers in orchestration
  • Making more containers deployable into cloud environments
  • Hassle free deployment of biocontainers
  • Understanding the challenges of cloud deployment and orchestration

Expected audience

  • researchers working or maintaining cloud infrastructure
  • Groups which want to migrate to cloud environments and moving towards work from home approach

Number of expected hacking days: 4