From 1adc3dfe98ba40c0d8b12a4f2684c22ed388fed8 Mon Sep 17 00:00:00 2001 From: github-actions Date: Tue, 3 Sep 2024 18:50:08 +0000 Subject: [PATCH 1/3] update dependencies for ubuntu-latest/py3.10 --- requirements/ubuntu-latest_py3.10.txt | 256 +++++-------- requirements/ubuntu-latest_py3.10_extras.txt | 359 ++++++++----------- 2 files changed, 228 insertions(+), 387 deletions(-) diff --git a/requirements/ubuntu-latest_py3.10.txt b/requirements/ubuntu-latest_py3.10.txt index 0ad8aacc..1b3292a9 100644 --- a/requirements/ubuntu-latest_py3.10.txt +++ b/requirements/ubuntu-latest_py3.10.txt @@ -6,22 +6,17 @@ # aiofiles==22.1.0 # via ypy-websocket -aioitertools==0.11.0 +aioitertools==0.12.0 # via maggma aiosqlite==0.20.0 # via ypy-websocket annotated-types==0.7.0 # via pydantic -anyio==4.3.0 - # via - # httpx - # jupyter-server - # starlette - # watchfiles +anyio==4.4.0 + # via jupyter-server argon2-cffi==23.1.0 # via # jupyter-server - # nbclassic # notebook argon2-cffi-bindings==21.2.0 # via argon2-cffi @@ -29,13 +24,14 @@ arrow==1.3.0 # via isoduration asttokens==2.4.1 # via stack-data -attrs==23.2.0 +attrs==24.2.0 # via + # jsonlines # jsonschema # referencing -babel==2.15.0 +babel==2.16.0 # via jupyterlab-server -bcrypt==4.1.3 +bcrypt==4.2.0 # via paramiko beautifulsoup4==4.12.3 # via nbconvert @@ -43,20 +39,17 @@ bleach==6.1.0 # via nbconvert blinker==1.8.2 # via flask -boto3==1.34.111 +boto3==1.35.10 # via maggma -botocore==1.34.111 +botocore==1.35.10 # via # boto3 # s3transfer cachelib==0.9.0 # via flask-caching -certifi==2024.2.2 - # via - # httpcore - # httpx - # requests -cffi==1.16.0 +certifi==2024.8.30 + # via requests +cffi==1.17.0 # via # argon2-cffi-bindings # cryptography @@ -64,22 +57,18 @@ cffi==1.16.0 charset-normalizer==3.3.2 # via requests click==8.1.7 - # via - # flask - # mongogrant - # typer - # uvicorn + # via flask comm==0.2.2 # via ipykernel -contourpy==1.2.1 +contourpy==1.3.0 # via matplotlib -cryptography==42.0.7 +cryptography==43.0.0 # via paramiko crystaltoolkit-extension==0.6.0 # via crystal_toolkit (pyproject.toml) cycler==0.12.1 # via matplotlib -dash==2.17.0 +dash==2.17.1 # via crystal_toolkit (pyproject.toml) dash-core-components==2.0.0 # via dash @@ -89,7 +78,7 @@ dash-mp-components==0.4.45 # via crystal_toolkit (pyproject.toml) dash-table==5.0.0 # via dash -debugpy==1.8.1 +debugpy==1.8.5 # via ipykernel decorator==5.1.1 # via ipython @@ -97,68 +86,46 @@ defusedxml==0.7.1 # via nbconvert dnspython==2.6.1 # via - # email-validator # maggma # pymongo -email-validator==2.1.1 - # via fastapi -emmet-core==0.83.6 +emmet-core==0.84.2rc6 # via mp-api entrypoints==0.4 # via jupyter-client -exceptiongroup==1.2.1 +exceptiongroup==1.2.2 # via # anyio # ipython -executing==2.0.1 +executing==2.1.0 # via stack-data -fastapi==0.111.0 - # via maggma -fastapi-cli==0.0.4 - # via fastapi -fastjsonschema==2.19.1 +fastjsonschema==2.20.0 # via nbformat flask==3.0.3 # via # dash # flask-caching - # mongogrant flask-caching==2.3.0 # via crystal_toolkit (pyproject.toml) -fonttools==4.51.0 +fonttools==4.53.1 # via matplotlib fqdn==1.5.1 # via jsonschema frozendict==2.4.4 # via crystal_toolkit (pyproject.toml) -future==1.0.0 - # via uncertainties -h11==0.14.0 - # via - # httpcore - # uvicorn -httpcore==1.0.5 - # via httpx -httptools==0.6.1 - # via uvicorn -httpx==0.27.0 - # via fastapi -idna==3.7 +idna==3.8 # via # anyio - # email-validator - # httpx # jsonschema # requests -imageio==2.34.1 +imageio==2.35.1 # via scikit-image -importlib-metadata==7.1.0 +importlib-metadata==8.4.0 # via dash -ipykernel==6.29.4 +ipykernel==6.29.5 # via # nbclassic # notebook -ipython==8.24.0 +ipython==8.27.0 # via # ipykernel # jupyterlab @@ -174,12 +141,10 @@ jedi==0.19.1 # via ipython jinja2==3.1.4 # via - # fastapi # flask # jupyter-server # jupyterlab # jupyterlab-server - # nbclassic # nbconvert # notebook jmespath==1.0.1 @@ -192,9 +157,11 @@ joblib==1.4.2 # scikit-learn json5==0.9.25 # via jupyterlab-server -jsonpointer==2.4 +jsonlines==4.0.0 + # via maggma +jsonpointer==3.0.0 # via jsonschema -jsonschema[format-nongpl]==4.22.0 +jsonschema[format-nongpl]==4.23.0 # via # jupyter-events # jupyterlab-server @@ -206,7 +173,6 @@ jupyter-client==7.4.9 # via # ipykernel # jupyter-server - # nbclassic # nbclient # notebook jupyter-core==5.7.2 @@ -215,7 +181,6 @@ jupyter-core==5.7.2 # jupyter-client # jupyter-server # jupyterlab - # nbclassic # nbclient # nbconvert # nbformat @@ -224,12 +189,11 @@ jupyter-events==0.10.0 # via # jupyter-server # jupyter-server-fileid -jupyter-server==2.14.0 +jupyter-server==2.14.2 # via # jupyter-server-fileid # jupyterlab # jupyterlab-server - # nbclassic # notebook-shim jupyter-server-fileid==0.9.2 # via jupyter-server-ydoc @@ -241,48 +205,42 @@ jupyter-ydoc==0.2.5 # via # jupyter-server-ydoc # jupyterlab -jupyterlab==3.6.7 +jupyterlab==3.6.8 # via crystaltoolkit-extension jupyterlab-pygments==0.3.0 # via nbconvert -jupyterlab-server==2.27.2 +jupyterlab-server==2.27.3 # via jupyterlab -kiwisolver==1.4.5 +kiwisolver==1.4.6 # via matplotlib latexcodec==3.0.0 # via pybtex lazy-loader==0.4 # via scikit-image -maggma==0.67.0 +maggma==0.69.3 # via mp-api -markdown-it-py==3.0.0 - # via rich markupsafe==2.1.5 # via # jinja2 # nbconvert # werkzeug -matplotlib==3.9.0 +matplotlib==3.9.2 # via pymatgen matplotlib-inline==0.1.7 # via # ipykernel # ipython -mdurl==0.1.2 - # via markdown-it-py mistune==3.0.2 # via nbconvert -mongogrant==0.3.3 - # via maggma mongomock==4.1.2 # via maggma -monty==2024.5.15 +monty==2024.7.30 # via # emmet-core # maggma # mp-api # pymatgen -mp-api==0.41.2 +mp-api==0.42.1 # via crystal_toolkit (pyproject.toml) mpmath==1.3.0 # via sympy @@ -290,7 +248,7 @@ msgpack==1.0.8 # via # maggma # mp-api -nbclassic==1.0.0 +nbclassic==1.1.0 # via # jupyterlab # notebook @@ -299,12 +257,10 @@ nbclient==0.10.0 nbconvert==7.16.4 # via # jupyter-server - # nbclassic # notebook nbformat==5.10.4 # via # jupyter-server - # nbclassic # nbclient # nbconvert # notebook @@ -326,6 +282,7 @@ notebook-shim==0.2.4 numpy==1.26.4 # via # contourpy + # emmet-core # imageio # maggma # matplotlib @@ -337,13 +294,11 @@ numpy==1.26.4 # shapely # spglib # tifffile -orjson==3.10.3 - # via - # fastapi - # maggma +orjson==3.10.7 + # via maggma overrides==7.7.0 # via jupyter-server -packaging==24.0 +packaging==24.1 # via # ipykernel # jupyter-server @@ -358,40 +313,41 @@ packaging==24.0 palettable==3.3.3 # via pymatgen pandas==2.2.2 - # via pymatgen + # via + # maggma + # pymatgen pandocfilters==1.5.1 # via nbconvert -paramiko==3.4.0 +paramiko==3.4.1 # via sshtunnel parso==0.8.4 # via jedi pexpect==4.9.0 # via ipython -pillow==10.3.0 +pillow==10.4.0 # via # imageio # matplotlib # scikit-image platformdirs==4.2.2 # via jupyter-core -plotly==5.22.0 +plotly==5.24.0 # via # dash # pymatgen prometheus-client==0.20.0 # via # jupyter-server - # nbclassic # notebook -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython -psutil==5.9.8 +psutil==6.0.0 # via ipykernel ptyprocess==0.7.0 # via # pexpect # terminado -pure-eval==0.2.2 +pure-eval==0.2.3 # via stack-data pybtex==0.24.0 # via @@ -399,38 +355,34 @@ pybtex==0.24.0 # pymatgen pycparser==2.22 # via cffi -pydantic==2.7.1 +pydantic==2.8.2 # via # emmet-core - # fastapi # maggma # pydantic-settings -pydantic-core==2.18.2 +pydantic-core==2.20.1 # via pydantic -pydantic-settings==2.2.1 +pydantic-settings==2.4.0 # via # crystal_toolkit (pyproject.toml) # emmet-core # maggma -pydash==8.0.1 +pydash==8.0.3 # via maggma pygments==2.18.0 # via # ipython # nbconvert - # rich -pymatgen==2024.5.1 +pymatgen==2024.8.9 # via # crystal_toolkit (pyproject.toml) # emmet-core # mp-api -pymongo==4.7.2 - # via - # maggma - # mongogrant +pymongo==4.8.0 + # via maggma pynacl==1.5.0 # via paramiko -pyparsing==3.1.2 +pyparsing==3.1.4 # via matplotlib python-dateutil==2.9.0.post0 # via @@ -441,38 +393,31 @@ python-dateutil==2.9.0.post0 # matplotlib # pandas python-dotenv==1.0.1 - # via - # pydantic-settings - # uvicorn + # via pydantic-settings python-json-logger==2.0.7 # via jupyter-events -python-multipart==0.0.9 - # via fastapi pytz==2024.1 # via pandas -pyyaml==6.0.1 +pyyaml==6.0.2 # via # jupyter-events # pybtex - # uvicorn -pyzmq==26.0.3 +pyzmq==26.2.0 # via # ipykernel # jupyter-client # jupyter-server # maggma - # nbclassic # notebook referencing==0.35.1 # via # jsonschema # jsonschema-specifications # jupyter-events -requests==2.32.2 +requests==2.32.3 # via # dash # jupyterlab-server - # mongogrant # mp-api # pymatgen retrying==1.3.4 @@ -485,9 +430,7 @@ rfc3986-validator==0.1.1 # via # jsonschema # jupyter-events -rich==13.7.1 - # via typer -rpds-py==0.18.1 +rpds-py==0.20.0 # via # jsonschema # referencing @@ -497,13 +440,13 @@ ruamel-yaml==0.18.6 # pymatgen ruamel-yaml-clib==0.2.8 # via ruamel-yaml -s3transfer==0.10.1 +s3transfer==0.10.2 # via boto3 -scikit-image==0.23.2 +scikit-image==0.24.0 # via crystal_toolkit (pyproject.toml) -scikit-learn==1.5.0 +scikit-learn==1.5.1 # via crystal_toolkit (pyproject.toml) -scipy==1.13.1 +scipy==1.14.1 # via # pymatgen # scikit-image @@ -511,14 +454,11 @@ scipy==1.13.1 send2trash==1.8.3 # via # jupyter-server - # nbclassic # notebook sentinels==1.0.0 # via mongomock -shapely==2.0.4 +shapely==2.0.6 # via crystal_toolkit (pyproject.toml) -shellingham==1.5.4 - # via typer six==1.16.0 # via # asttokens @@ -530,49 +470,43 @@ six==1.16.0 smart-open==7.0.4 # via mp-api sniffio==1.3.1 - # via - # anyio - # httpx -soupsieve==2.5 + # via anyio +soupsieve==2.6 # via beautifulsoup4 -spglib==2.4.0 +spglib==2.5.0 # via pymatgen sshtunnel==0.4.0 # via maggma stack-data==0.6.3 # via ipython -starlette==0.37.2 - # via fastapi -sympy==1.12 +sympy==1.13.2 # via pymatgen tabulate==0.9.0 # via pymatgen -tenacity==8.3.0 +tenacity==9.0.0 # via plotly terminado==0.18.1 # via # jupyter-server # jupyter-server-terminals - # nbclassic # notebook threadpoolctl==3.5.0 # via scikit-learn -tifffile==2024.5.22 +tifffile==2024.8.30 # via scikit-image tinycss2==1.3.0 # via nbconvert tomli==2.0.1 # via jupyterlab -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client # jupyter-server # jupyterlab - # nbclassic # notebook # terminado -tqdm==4.66.4 +tqdm==4.66.5 # via # maggma # pymatgen @@ -586,52 +520,36 @@ traitlets==5.14.3 # jupyter-events # jupyter-server # matplotlib-inline - # nbclassic # nbclient # nbconvert # nbformat # notebook -typer==0.12.3 - # via fastapi-cli -types-python-dateutil==2.9.0.20240316 +types-python-dateutil==2.9.0.20240821 # via arrow -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # aiosqlite # anyio # dash # emmet-core - # fastapi # ipython # mp-api # pydantic # pydantic-core # pydash - # typer - # uvicorn tzdata==2024.1 # via pandas -ujson==5.10.0 - # via fastapi -uncertainties==3.1.7 +uncertainties==3.2.2 # via pymatgen uri-template==1.3.0 # via jsonschema -urllib3==2.2.1 +urllib3==2.2.2 # via # botocore # requests -uvicorn[standard]==0.29.0 - # via - # fastapi - # maggma -uvloop==0.19.0 - # via uvicorn -watchfiles==0.21.0 - # via uvicorn wcwidth==0.2.13 # via prompt-toolkit -webcolors==1.13 +webcolors==24.8.0 # via # crystal_toolkit (pyproject.toml) # jsonschema @@ -641,9 +559,7 @@ webencodings==0.5.1 # tinycss2 websocket-client==1.8.0 # via jupyter-server -websockets==12.0 - # via uvicorn -werkzeug==3.0.3 +werkzeug==3.0.4 # via # dash # flask @@ -655,7 +571,7 @@ y-py==0.6.2 # ypy-websocket ypy-websocket==0.8.4 # via jupyter-server-ydoc -zipp==3.18.2 +zipp==3.20.1 # via importlib-metadata # The following packages are considered to be unsafe in a requirements file: diff --git a/requirements/ubuntu-latest_py3.10_extras.txt b/requirements/ubuntu-latest_py3.10_extras.txt index 5efb70ef..0d9c42fb 100644 --- a/requirements/ubuntu-latest_py3.10_extras.txt +++ b/requirements/ubuntu-latest_py3.10_extras.txt @@ -6,9 +6,11 @@ # aiofiles==22.1.0 # via ypy-websocket -aiohttp==3.9.5 +aiohappyeyeballs==2.4.0 + # via aiohttp +aiohttp==3.10.5 # via dephell -aioitertools==0.11.0 +aioitertools==0.12.0 # via maggma aiosignal==1.3.1 # via aiohttp @@ -18,22 +20,17 @@ alabaster==0.7.16 # via sphinx annotated-types==0.7.0 # via pydantic -anyio==4.3.0 - # via - # httpx - # jupyter-server - # starlette - # watchfiles +anyio==4.4.0 + # via jupyter-server argon2-cffi==23.1.0 # via # jupyter-server - # nbclassic # notebook argon2-cffi-bindings==21.2.0 # via argon2-cffi arrow==1.3.0 # via isoduration -ase==3.22.1 +ase==3.23.0 # via # boltztrap2 # dscribe @@ -44,7 +41,7 @@ async-timeout==4.0.3 # via # aiohttp # redis -attrs==23.2.0 +attrs==24.2.0 # via # aiohttp # dephell @@ -56,32 +53,33 @@ attrs==23.2.0 # dephell-pythons # dephell-shells # dephell-venvs + # jsonlines # jsonschema # outcome # referencing # trio -babel==2.15.0 +babel==2.16.0 # via # jupyterlab-server # sphinx -bcrypt==4.1.3 +bcrypt==4.2.0 # via paramiko beautifulsoup4==4.12.3 # via # dash # gdown # nbconvert -black==24.4.2 +black==24.8.0 # via crystal_toolkit (pyproject.toml) bleach==6.1.0 # via nbconvert blinker==1.8.2 # via flask -boltztrap2==24.1.1 +boltztrap2==24.7.2 # via ifermi -boto3==1.34.111 +boto3==1.35.10 # via maggma -botocore==1.34.111 +botocore==1.35.10 # via # boto3 # s3transfer @@ -89,22 +87,20 @@ cachelib==0.9.0 # via flask-caching cerberus==1.3.5 # via dephell -certifi==2024.2.2 +certifi==2024.8.30 # via # dephell - # httpcore - # httpx # netcdf4 # requests # urllib3 -cffi==1.16.0 +cffi==1.17.0 # via # argon2-cffi-bindings # cryptography # pynacl cfgv==3.4.0 # via pre-commit -cftime==1.6.3 +cftime==1.6.4 # via netcdf4 charset-normalizer==3.3.2 # via requests @@ -115,9 +111,6 @@ click==8.1.7 # distributed # flask # ifermi - # mongogrant - # typer - # uvicorn cloudpickle==3.0.0 # via # dask @@ -128,10 +121,11 @@ comm==0.2.2 # via ipykernel commonmark==0.9.1 # via recommonmark -contourpy==1.2.1 +contourpy==1.3.0 # via matplotlib -cryptography==42.0.7 +cryptography==43.0.0 # via + # dash # paramiko # pyopenssl # urllib3 @@ -139,14 +133,16 @@ crystaltoolkit-extension==0.6.0 # via crystal_toolkit (pyproject.toml) cycler==0.12.1 # via matplotlib -dash[testing]==2.17.0 +cython==3.0.11 + # via boltztrap2 +dash[testing]==2.17.1 # via # crystal_toolkit (pyproject.toml) # dash-extensions # dash-vtk dash-core-components==2.0.0 # via dash -dash-extensions==1.0.15 +dash-extensions==1.0.18 # via crystal_toolkit (pyproject.toml) dash-html-components==2.0.0 # via dash @@ -158,13 +154,13 @@ dash-testing-stub==0.0.2 # via dash dash-vtk==0.0.9 # via crystal_toolkit (pyproject.toml) -dask==2024.5.1 +dask==2024.8.2 # via # distributed # py4dstem dataclass-wizard==0.22.3 # via dash-extensions -debugpy==1.8.1 +debugpy==1.8.5 # via ipykernel decorator==5.1.1 # via ipython @@ -209,11 +205,10 @@ dill==0.3.8 # py4dstem distlib==0.3.8 # via virtualenv -distributed==2024.5.1 +distributed==2024.8.2 # via py4dstem dnspython==2.6.1 # via - # email-validator # maggma # pymongo docutils==0.20.1 @@ -222,36 +217,30 @@ docutils==0.20.1 # recommonmark # sphinx # sphinx-rtd-theme -dscribe==2.1.0 +dscribe==2.1.1 # via crystal_toolkit (pyproject.toml) editorconfig==0.12.4 # via jsbeautifier -email-validator==2.1.1 - # via fastapi -emdfile==0.0.14 +emdfile==0.0.15 # via py4dstem -emmet-core==0.83.6 +emmet-core==0.84.2rc6 # via mp-api entrypoints==0.4 # via # jupyter-client # nbconvert -exceptiongroup==1.2.1 +exceptiongroup==1.2.2 # via # anyio # ipython # pytest # trio # trio-websocket -executing==2.0.1 +executing==2.1.0 # via stack-data -fastapi==0.111.0 - # via maggma -fastapi-cli==0.0.4 - # via fastapi -fastjsonschema==2.19.1 +fastjsonschema==2.20.0 # via nbformat -filelock==3.14.0 +filelock==3.15.4 # via # gdown # virtualenv @@ -259,12 +248,11 @@ flask==3.0.3 # via # dash # flask-caching - # mongogrant flask-caching==2.3.0 # via # crystal_toolkit (pyproject.toml) # dash-extensions -fonttools==4.51.0 +fonttools==4.53.1 # via matplotlib fqdn==1.5.1 # via jsonschema @@ -274,10 +262,8 @@ frozenlist==1.4.1 # via # aiohttp # aiosignal -fsspec==2024.5.0 +fsspec==2024.6.1 # via dask -future==1.0.0 - # via uncertainties gdown==5.2.0 # via py4dstem gevent==24.2.1 @@ -286,13 +272,10 @@ greenlet==3.0.3 # via # gevent # playwright -gunicorn[gevent]==22.0.0 +gunicorn[gevent]==23.0.0 # via crystal_toolkit (pyproject.toml) h11==0.14.0 - # via - # httpcore - # uvicorn - # wsproto + # via wsproto h5py==3.11.0 # via # emdfile @@ -302,47 +285,39 @@ h5py==3.11.0 # py4dstem habanero==1.2.6 # via crystal_toolkit (pyproject.toml) -hdf5plugin==4.4.0 +hdf5plugin==5.0.0 # via py4dstem -hiphive==1.2 +hiphive==1.3.1 # via crystal_toolkit (pyproject.toml) -httpcore==1.0.5 - # via httpx -httptools==0.6.1 - # via uvicorn -httpx==0.27.0 - # via fastapi -identify==2.5.36 +identify==2.6.0 # via pre-commit -idna==3.7 +idna==3.8 # via # anyio - # email-validator - # httpx # jsonschema # requests # trio # urllib3 # yarl -ifermi==0.3.4 +ifermi==0.3.5 # via crystal_toolkit (pyproject.toml) -imageio==2.34.1 +imageio==2.35.1 # via scikit-image imagesize==1.4.1 # via sphinx -importlib-metadata==7.1.0 +importlib-metadata==8.4.0 # via # dash # dask -inflect==7.2.1 +inflect==7.3.1 # via robocrys iniconfig==2.0.0 # via pytest -ipykernel==6.29.4 +ipykernel==6.29.5 # via # nbclassic # notebook -ipython==8.24.0 +ipython==8.27.0 # via # ipykernel # jupyterlab @@ -361,12 +336,10 @@ jinja2==3.1.4 # crystal_toolkit (pyproject.toml) # dephell # distributed - # fastapi # flask # jupyter-server # jupyterlab # jupyterlab-server - # nbclassic # nbconvert # notebook # sphinx @@ -384,9 +357,11 @@ jsbeautifier==1.15.1 # via dash-extensions json5==0.9.25 # via jupyterlab-server -jsonpointer==2.4 +jsonlines==4.0.0 + # via maggma +jsonpointer==3.0.0 # via jsonschema -jsonschema[format-nongpl]==4.22.0 +jsonschema[format-nongpl]==4.23.0 # via # jupyter-events # jupyterlab-server @@ -398,7 +373,6 @@ jupyter-client==7.4.9 # via # ipykernel # jupyter-server - # nbclassic # nbclient # notebook jupyter-core==5.7.2 @@ -407,7 +381,6 @@ jupyter-core==5.7.2 # jupyter-client # jupyter-server # jupyterlab - # nbclassic # nbclient # nbconvert # nbformat @@ -416,12 +389,11 @@ jupyter-events==0.10.0 # via # jupyter-server # jupyter-server-fileid -jupyter-server==2.14.0 +jupyter-server==2.14.2 # via # jupyter-server-fileid # jupyterlab # jupyterlab-server - # nbclassic # notebook-shim jupyter-server-fileid==0.9.2 # via jupyter-server-ydoc @@ -433,36 +405,34 @@ jupyter-ydoc==0.2.5 # via # jupyter-server-ydoc # jupyterlab -jupyterlab==3.6.7 +jupyterlab==3.6.8 # via crystaltoolkit-extension jupyterlab-pygments==0.3.0 # via nbconvert -jupyterlab-server==2.27.2 +jupyterlab-server==2.27.3 # via jupyterlab kaleido==0.2.1 # via crystal_toolkit (pyproject.toml) -kiwisolver==1.4.5 +kiwisolver==1.4.6 # via matplotlib latexcodec==3.0.0 # via pybtex lazy-loader==0.4 # via scikit-image -llvmlite==0.42.0 +llvmlite==0.43.0 # via numba locket==1.0.0 # via # distributed # partd -lxml==5.2.2 +lxml==5.3.0 # via # dash # nbconvert m2r==0.3.1 # via dephell -maggma==0.67.0 +maggma==0.69.3 # via mp-api -markdown-it-py==3.0.0 - # via rich markupsafe==2.1.5 # via # jinja2 @@ -470,7 +440,7 @@ markupsafe==2.1.5 # werkzeug matminer==0.9.2 # via robocrys -matplotlib==3.9.0 +matplotlib==3.9.2 # via # ase # boltztrap2 @@ -483,19 +453,15 @@ matplotlib-inline==0.1.7 # via # ipykernel # ipython -mdurl==0.1.2 - # via markdown-it-py meshcut==0.3.0 # via ifermi mistune==0.8.4 # via # m2r # nbconvert -mongogrant==0.3.3 - # via maggma mongomock==4.1.2 # via maggma -monty==2024.5.15 +monty==2024.7.30 # via # emmet-core # ifermi @@ -504,11 +470,11 @@ monty==2024.5.15 # mp-api # pymatgen # robocrys -more-itertools==9.1.0 +more-itertools==10.4.0 # via # dash-extensions # inflect -mp-api==0.41.2 +mp-api==0.42.1 # via # crystal_toolkit (pyproject.toml) # robocrys @@ -529,7 +495,7 @@ multiprocess==0.70.16 # via dash mypy-extensions==1.0.0 # via black -nbclassic==1.0.0 +nbclassic==1.1.0 # via # jupyterlab # notebook @@ -538,16 +504,14 @@ nbclient==0.10.0 nbconvert==6.5.4 # via # jupyter-server - # nbclassic # notebook nbformat==5.10.4 # via # jupyter-server - # nbclassic # nbclient # nbconvert # notebook -ncempy==1.11.1 +ncempy==1.11.3 # via py4dstem nest-asyncio==1.6.0 # via @@ -556,7 +520,7 @@ nest-asyncio==1.6.0 # jupyter-client # nbclassic # notebook -netcdf4==1.6.5 +netcdf4==1.7.1.post2 # via boltztrap2 networkx==3.3 # via @@ -564,13 +528,13 @@ networkx==3.3 # pymatgen # robocrys # scikit-image -nodeenv==1.8.0 +nodeenv==1.9.1 # via pre-commit notebook==6.5.7 # via jupyterlab notebook-shim==0.2.4 # via nbclassic -numba==0.59.1 +numba==0.60.0 # via # hiphive # sparse @@ -583,6 +547,7 @@ numpy==1.26.4 # contourpy # dscribe # emdfile + # emmet-core # h5py # hiphive # ifermi @@ -611,17 +576,15 @@ numpy==1.26.4 # tifffile # trainstation # trimesh -numpy-stl==3.1.1 +numpy-stl==3.1.2 # via meshcut -orjson==3.10.3 - # via - # fastapi - # maggma +orjson==3.10.7 + # via maggma outcome==1.3.0.post0 # via trio overrides==7.7.0 # via jupyter-server -packaging==24.0 +packaging==24.1 # via # black # dask @@ -650,11 +613,12 @@ palettable==3.3.3 pandas==2.2.2 # via # hiphive + # maggma # matminer # pymatgen pandocfilters==1.5.1 # via nbconvert -paramiko==3.4.0 +paramiko==3.4.1 # via sshtunnel parso==0.8.4 # via jedi @@ -668,7 +632,7 @@ pexpect==4.9.0 # via # dephell-shells # ipython -pillow==10.3.0 +pillow==10.4.0 # via # imageio # matplotlib @@ -678,27 +642,26 @@ platformdirs==4.2.2 # black # jupyter-core # virtualenv -playwright==1.44.0 +playwright==1.46.0 # via # crystal_toolkit (pyproject.toml) # pytest-playwright -plotly==5.22.0 +plotly==5.24.0 # via # dash # ifermi # pymatgen pluggy==1.5.0 # via pytest -pre-commit==3.7.1 +pre-commit==3.8.0 # via crystal_toolkit (pyproject.toml) prometheus-client==0.20.0 # via # jupyter-server - # nbclassic # notebook -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython -psutil==5.9.8 +psutil==6.0.0 # via # dash # distributed @@ -710,14 +673,12 @@ ptyprocess==0.7.0 # terminado pubchempy==1.0.4 # via robocrys -pure-eval==0.2.2 +pure-eval==0.2.3 # via stack-data -py4dstem==0.14.14 +py4dstem==0.14.16 # via crystal_toolkit (pyproject.toml) -pyaml==24.4.0 +pyaml==24.7.0 # via scikit-optimize -pybind11==2.12.0 - # via dscribe pybtex==0.24.0 # via # emmet-core @@ -725,24 +686,24 @@ pybtex==0.24.0 # robocrys pycparser==2.22 # via cffi -pydantic==2.7.1 +pydantic==2.8.2 # via + # dash-extensions # emmet-core - # fastapi # maggma # pydantic-settings -pydantic-core==2.18.2 +pydantic-core==2.20.1 # via pydantic -pydantic-settings==2.2.1 +pydantic-settings==2.4.0 # via # crystal_toolkit (pyproject.toml) # emmet-core # maggma -pydash==8.0.1 +pydash==8.0.3 # via maggma pyee==11.1.0 # via playwright -pyfftw==0.13.1 +pyfftw==0.14.0 # via # crystal_toolkit (pyproject.toml) # ifermi @@ -751,11 +712,10 @@ pygments==2.18.0 # ipython # mpire # nbconvert - # rich # sphinx -pylops==2.2.0 +pylops==2.3.1 # via py4dstem -pymatgen==2024.5.1 +pymatgen==2024.8.9 # via # crystal_toolkit (pyproject.toml) # emmet-core @@ -763,22 +723,21 @@ pymatgen==2024.5.1 # matminer # mp-api # robocrys -pymongo==4.7.2 +pymongo==4.8.0 # via # maggma # matminer - # mongogrant pynacl==1.5.0 # via paramiko -pyopenssl==24.1.0 +pyopenssl==24.2.1 # via urllib3 -pyparsing==3.1.2 +pyparsing==3.1.4 # via matplotlib pysocks==1.7.1 # via # requests # urllib3 -pytest==8.2.1 +pytest==8.3.2 # via # crystal_toolkit (pyproject.toml) # dash @@ -786,7 +745,7 @@ pytest==8.2.1 # pytest-playwright pytest-base-url==2.1.0 # via pytest-playwright -pytest-playwright==0.5.0 +pytest-playwright==0.5.1 # via crystal_toolkit (pyproject.toml) python-dateutil==2.9.0.post0 # via @@ -797,20 +756,16 @@ python-dateutil==2.9.0.post0 # matplotlib # pandas python-dotenv==1.0.1 - # via - # pydantic-settings - # uvicorn + # via pydantic-settings python-json-logger==2.0.7 # via jupyter-events -python-multipart==0.0.9 - # via fastapi python-slugify==8.0.4 # via pytest-playwright python-utils==3.8.2 # via numpy-stl pytz==2024.1 # via pandas -pyyaml==6.0.1 +pyyaml==6.0.2 # via # dask # distributed @@ -818,25 +773,23 @@ pyyaml==6.0.1 # pre-commit # pyaml # pybtex - # uvicorn -pyzmq==26.0.3 +pyzmq==26.2.0 # via # ipykernel # jupyter-client # jupyter-server # maggma - # nbclassic # notebook recommonmark==0.7.1 # via crystal_toolkit (pyproject.toml) -redis==5.0.4 +redis==5.0.8 # via crystal_toolkit (pyproject.toml) referencing==0.35.1 # via # jsonschema # jsonschema-specifications # jupyter-events -requests[security,socks]==2.32.2 +requests[security,socks]==2.32.3 # via # dash # dephell @@ -847,7 +800,6 @@ requests[security,socks]==2.32.2 # habanero # jupyterlab-server # matminer - # mongogrant # mp-api # percy # pymatgen @@ -863,11 +815,9 @@ rfc3986-validator==0.1.1 # via # jsonschema # jupyter-events -rich==13.7.1 - # via typer robocrys==0.2.9 # via crystal_toolkit (pyproject.toml) -rpds-py==0.18.1 +rpds-py==0.20.0 # via # jsonschema # referencing @@ -879,14 +829,16 @@ ruamel-yaml==0.18.6 # robocrys ruamel-yaml-clib==0.2.8 # via ruamel-yaml -s3transfer==0.10.1 +ruff==0.4.10 + # via dash-extensions +s3transfer==0.10.2 # via boto3 -scikit-image==0.23.2 +scikit-image==0.24.0 # via # crystal_toolkit (pyproject.toml) # ifermi # py4dstem -scikit-learn==1.5.0 +scikit-learn==1.4.2 # via # crystal_toolkit (pyproject.toml) # dscribe @@ -895,9 +847,9 @@ scikit-learn==1.5.0 # py4dstem # scikit-optimize # trainstation -scikit-optimize==0.10.1 +scikit-optimize==0.10.2 # via py4dstem -scipy==1.13.1 +scipy==1.14.1 # via # ase # boltztrap2 @@ -920,16 +872,13 @@ selenium==4.2.0 send2trash==1.8.3 # via # jupyter-server - # nbclassic # notebook sentinels==1.0.0 # via mongomock -shapely==2.0.4 +shapely==2.0.6 # via crystal_toolkit (pyproject.toml) shellingham==1.5.4 - # via - # dephell-shells - # typer + # via dephell-shells six==1.16.0 # via # asttokens @@ -944,7 +893,6 @@ smart-open==7.0.4 sniffio==1.3.1 # via # anyio - # httpx # trio snowballstemmer==2.2.0 # via sphinx @@ -952,45 +900,43 @@ sortedcontainers==2.4.0 # via # distributed # trio -soupsieve==2.5 +soupsieve==2.6 # via beautifulsoup4 sparse==0.15.4 # via dscribe -spglib==2.4.0 +spglib==2.5.0 # via # boltztrap2 # hiphive # ifermi # pymatgen # robocrys -sphinx==7.3.7 +sphinx==7.4.7 # via # recommonmark # sphinx-rtd-theme # sphinxcontrib-jquery sphinx-rtd-theme==2.0.0 # via crystal_toolkit (pyproject.toml) -sphinxcontrib-applehelp==1.0.8 +sphinxcontrib-applehelp==2.0.0 # via sphinx -sphinxcontrib-devhelp==1.0.6 +sphinxcontrib-devhelp==2.0.0 # via sphinx -sphinxcontrib-htmlhelp==2.0.5 +sphinxcontrib-htmlhelp==2.1.0 # via sphinx sphinxcontrib-jquery==4.1 # via sphinx-rtd-theme sphinxcontrib-jsmath==1.0.1 # via sphinx -sphinxcontrib-qthelp==1.0.7 +sphinxcontrib-qthelp==2.0.0 # via sphinx -sphinxcontrib-serializinghtml==1.1.10 +sphinxcontrib-serializinghtml==2.0.0 # via sphinx sshtunnel==0.4.0 # via maggma stack-data==0.6.3 # via ipython -starlette==0.37.2 - # via fastapi -sympy==1.12 +sympy==1.13.2 # via # hiphive # matminer @@ -1001,7 +947,7 @@ tabulate==0.9.0 # pymatgen tblib==3.0.0 # via distributed -tenacity==8.3.0 +tenacity==9.0.0 # via plotly termcolor==2.3.0 # via yaspin @@ -1009,7 +955,6 @@ terminado==0.18.1 # via # jupyter-server # jupyter-server-terminals - # nbclassic # notebook text-unidecode==1.3 # via python-slugify @@ -1017,7 +962,7 @@ threadpoolctl==3.5.0 # via # py4dstem # scikit-learn -tifffile==2024.5.22 +tifffile==2024.8.30 # via scikit-image tinycss2==1.3.0 # via nbconvert @@ -1027,24 +972,23 @@ tomli==2.0.1 # jupyterlab # pytest # sphinx -tomlkit==0.12.5 +tomlkit==0.13.2 # via dephell toolz==0.12.1 # via # dask # distributed # partd -tornado==6.4 +tornado==6.4.1 # via # distributed # ipykernel # jupyter-client # jupyter-server # jupyterlab - # nbclassic # notebook # terminado -tqdm==4.66.4 +tqdm==4.66.5 # via # emdfile # gdown @@ -1054,7 +998,7 @@ tqdm==4.66.4 # mpire # py4dstem # pymatgen -trainstation==1.0 +trainstation==1.1 # via hiphive traitlets==5.14.3 # via @@ -1066,34 +1010,29 @@ traitlets==5.14.3 # jupyter-events # jupyter-server # matplotlib-inline - # nbclassic # nbclient # nbconvert # nbformat # notebook -trimesh==4.4.0 +trimesh==4.4.8 # via ifermi -trio==0.25.1 +trio==0.26.2 # via # selenium # trio-websocket trio-websocket==0.11.1 # via selenium -typeguard==4.2.1 +typeguard==4.3.0 # via inflect -typer==0.12.3 - # via fastapi-cli -types-python-dateutil==2.9.0.20240316 +types-python-dateutil==2.9.0.20240821 # via arrow -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # aiosqlite # anyio # black # dash # emmet-core - # fastapi - # inflect # ipython # mp-api # pydantic @@ -1102,17 +1041,13 @@ typing-extensions==4.11.0 # pyee # python-utils # typeguard - # typer - # uvicorn tzdata==2024.1 # via pandas -ujson==5.10.0 - # via fastapi -uncertainties==3.1.7 +uncertainties==3.2.2 # via pymatgen uri-template==1.3.0 # via jsonschema -urllib3[secure,socks]==1.26.18 +urllib3[secure,socks]==1.26.20 # via # botocore # distributed @@ -1120,23 +1055,15 @@ urllib3[secure,socks]==1.26.18 # selenium urllib3-secure-extra==0.1.0 # via urllib3 -uvicorn[standard]==0.29.0 - # via - # fastapi - # maggma -uvloop==0.19.0 - # via uvicorn -virtualenv==20.26.2 +virtualenv==20.26.3 # via pre-commit -vtk==9.3.0 +vtk==9.3.1 # via dash-vtk waitress==3.0.0 # via dash -watchfiles==0.21.0 - # via uvicorn wcwidth==0.2.13 # via prompt-toolkit -webcolors==1.13 +webcolors==24.8.0 # via # crystal_toolkit (pyproject.toml) # jsonschema @@ -1146,9 +1073,7 @@ webencodings==0.5.1 # tinycss2 websocket-client==1.8.0 # via jupyter-server -websockets==12.0 - # via uvicorn -werkzeug==3.0.3 +werkzeug==3.0.4 # via # dash # flask @@ -1160,7 +1085,7 @@ y-py==0.6.2 # via # jupyter-ydoc # ypy-websocket -yarl==1.9.4 +yarl==1.9.7 # via aiohttp yaspin==3.0.2 # via dephell @@ -1168,11 +1093,11 @@ ypy-websocket==0.8.4 # via jupyter-server-ydoc zict==3.0.0 # via distributed -zipp==3.18.2 +zipp==3.20.1 # via importlib-metadata zope-event==5.0 # via gevent -zope-interface==6.4.post1 +zope-interface==7.0.3 # via gevent # The following packages are considered to be unsafe in a requirements file: From 82af574b67f61ba09eec108b808c68ffdf1d6d9d Mon Sep 17 00:00:00 2001 From: github-actions Date: Tue, 3 Sep 2024 18:49:26 +0000 Subject: [PATCH 2/3] update dependencies for ubuntu-latest/py3.11 --- requirements/ubuntu-latest_py3.11.txt | 253 +++++-------- requirements/ubuntu-latest_py3.11_extras.txt | 356 ++++++++----------- 2 files changed, 226 insertions(+), 383 deletions(-) diff --git a/requirements/ubuntu-latest_py3.11.txt b/requirements/ubuntu-latest_py3.11.txt index ce24f2a1..dcb0e801 100644 --- a/requirements/ubuntu-latest_py3.11.txt +++ b/requirements/ubuntu-latest_py3.11.txt @@ -6,22 +6,17 @@ # aiofiles==22.1.0 # via ypy-websocket -aioitertools==0.11.0 +aioitertools==0.12.0 # via maggma aiosqlite==0.20.0 # via ypy-websocket annotated-types==0.7.0 # via pydantic -anyio==4.3.0 - # via - # httpx - # jupyter-server - # starlette - # watchfiles +anyio==4.4.0 + # via jupyter-server argon2-cffi==23.1.0 # via # jupyter-server - # nbclassic # notebook argon2-cffi-bindings==21.2.0 # via argon2-cffi @@ -29,13 +24,14 @@ arrow==1.3.0 # via isoduration asttokens==2.4.1 # via stack-data -attrs==23.2.0 +attrs==24.2.0 # via + # jsonlines # jsonschema # referencing -babel==2.15.0 +babel==2.16.0 # via jupyterlab-server -bcrypt==4.1.3 +bcrypt==4.2.0 # via paramiko beautifulsoup4==4.12.3 # via nbconvert @@ -43,20 +39,17 @@ bleach==6.1.0 # via nbconvert blinker==1.8.2 # via flask -boto3==1.34.111 +boto3==1.35.10 # via maggma -botocore==1.34.111 +botocore==1.35.10 # via # boto3 # s3transfer cachelib==0.9.0 # via flask-caching -certifi==2024.2.2 - # via - # httpcore - # httpx - # requests -cffi==1.16.0 +certifi==2024.8.30 + # via requests +cffi==1.17.0 # via # argon2-cffi-bindings # cryptography @@ -64,22 +57,18 @@ cffi==1.16.0 charset-normalizer==3.3.2 # via requests click==8.1.7 - # via - # flask - # mongogrant - # typer - # uvicorn + # via flask comm==0.2.2 # via ipykernel -contourpy==1.2.1 +contourpy==1.3.0 # via matplotlib -cryptography==42.0.7 +cryptography==43.0.0 # via paramiko crystaltoolkit-extension==0.6.0 # via crystal_toolkit (pyproject.toml) cycler==0.12.1 # via matplotlib -dash==2.17.0 +dash==2.17.1 # via crystal_toolkit (pyproject.toml) dash-core-components==2.0.0 # via dash @@ -89,7 +78,7 @@ dash-mp-components==0.4.45 # via crystal_toolkit (pyproject.toml) dash-table==5.0.0 # via dash -debugpy==1.8.1 +debugpy==1.8.5 # via ipykernel decorator==5.1.1 # via ipython @@ -97,64 +86,42 @@ defusedxml==0.7.1 # via nbconvert dnspython==2.6.1 # via - # email-validator # maggma # pymongo -email-validator==2.1.1 - # via fastapi -emmet-core==0.83.6 +emmet-core==0.84.2rc6 # via mp-api entrypoints==0.4 # via jupyter-client -executing==2.0.1 +executing==2.1.0 # via stack-data -fastapi==0.111.0 - # via maggma -fastapi-cli==0.0.4 - # via fastapi -fastjsonschema==2.19.1 +fastjsonschema==2.20.0 # via nbformat flask==3.0.3 # via # dash # flask-caching - # mongogrant flask-caching==2.3.0 # via crystal_toolkit (pyproject.toml) -fonttools==4.51.0 +fonttools==4.53.1 # via matplotlib fqdn==1.5.1 # via jsonschema frozendict==2.4.4 # via crystal_toolkit (pyproject.toml) -future==1.0.0 - # via uncertainties -h11==0.14.0 - # via - # httpcore - # uvicorn -httpcore==1.0.5 - # via httpx -httptools==0.6.1 - # via uvicorn -httpx==0.27.0 - # via fastapi -idna==3.7 +idna==3.8 # via # anyio - # email-validator - # httpx # jsonschema # requests -imageio==2.34.1 +imageio==2.35.1 # via scikit-image -importlib-metadata==7.1.0 +importlib-metadata==8.4.0 # via dash -ipykernel==6.29.4 +ipykernel==6.29.5 # via # nbclassic # notebook -ipython==8.24.0 +ipython==8.27.0 # via # ipykernel # jupyterlab @@ -170,12 +137,10 @@ jedi==0.19.1 # via ipython jinja2==3.1.4 # via - # fastapi # flask # jupyter-server # jupyterlab # jupyterlab-server - # nbclassic # nbconvert # notebook jmespath==1.0.1 @@ -188,9 +153,11 @@ joblib==1.4.2 # scikit-learn json5==0.9.25 # via jupyterlab-server -jsonpointer==2.4 +jsonlines==4.0.0 + # via maggma +jsonpointer==3.0.0 # via jsonschema -jsonschema[format-nongpl]==4.22.0 +jsonschema[format-nongpl]==4.23.0 # via # jupyter-events # jupyterlab-server @@ -202,7 +169,6 @@ jupyter-client==7.4.9 # via # ipykernel # jupyter-server - # nbclassic # nbclient # notebook jupyter-core==5.7.2 @@ -211,7 +177,6 @@ jupyter-core==5.7.2 # jupyter-client # jupyter-server # jupyterlab - # nbclassic # nbclient # nbconvert # nbformat @@ -220,12 +185,11 @@ jupyter-events==0.10.0 # via # jupyter-server # jupyter-server-fileid -jupyter-server==2.14.0 +jupyter-server==2.14.2 # via # jupyter-server-fileid # jupyterlab # jupyterlab-server - # nbclassic # notebook-shim jupyter-server-fileid==0.9.2 # via jupyter-server-ydoc @@ -237,48 +201,42 @@ jupyter-ydoc==0.2.5 # via # jupyter-server-ydoc # jupyterlab -jupyterlab==3.6.7 +jupyterlab==3.6.8 # via crystaltoolkit-extension jupyterlab-pygments==0.3.0 # via nbconvert -jupyterlab-server==2.27.2 +jupyterlab-server==2.27.3 # via jupyterlab -kiwisolver==1.4.5 +kiwisolver==1.4.6 # via matplotlib latexcodec==3.0.0 # via pybtex lazy-loader==0.4 # via scikit-image -maggma==0.67.0 +maggma==0.69.3 # via mp-api -markdown-it-py==3.0.0 - # via rich markupsafe==2.1.5 # via # jinja2 # nbconvert # werkzeug -matplotlib==3.9.0 +matplotlib==3.9.2 # via pymatgen matplotlib-inline==0.1.7 # via # ipykernel # ipython -mdurl==0.1.2 - # via markdown-it-py mistune==3.0.2 # via nbconvert -mongogrant==0.3.3 - # via maggma mongomock==4.1.2 # via maggma -monty==2024.5.15 +monty==2024.7.30 # via # emmet-core # maggma # mp-api # pymatgen -mp-api==0.41.2 +mp-api==0.42.1 # via crystal_toolkit (pyproject.toml) mpmath==1.3.0 # via sympy @@ -286,7 +244,7 @@ msgpack==1.0.8 # via # maggma # mp-api -nbclassic==1.0.0 +nbclassic==1.1.0 # via # jupyterlab # notebook @@ -295,12 +253,10 @@ nbclient==0.10.0 nbconvert==7.16.4 # via # jupyter-server - # nbclassic # notebook nbformat==5.10.4 # via # jupyter-server - # nbclassic # nbclient # nbconvert # notebook @@ -322,6 +278,7 @@ notebook-shim==0.2.4 numpy==1.26.4 # via # contourpy + # emmet-core # imageio # maggma # matplotlib @@ -333,13 +290,11 @@ numpy==1.26.4 # shapely # spglib # tifffile -orjson==3.10.3 - # via - # fastapi - # maggma +orjson==3.10.7 + # via maggma overrides==7.7.0 # via jupyter-server -packaging==24.0 +packaging==24.1 # via # ipykernel # jupyter-server @@ -354,40 +309,41 @@ packaging==24.0 palettable==3.3.3 # via pymatgen pandas==2.2.2 - # via pymatgen + # via + # maggma + # pymatgen pandocfilters==1.5.1 # via nbconvert -paramiko==3.4.0 +paramiko==3.4.1 # via sshtunnel parso==0.8.4 # via jedi pexpect==4.9.0 # via ipython -pillow==10.3.0 +pillow==10.4.0 # via # imageio # matplotlib # scikit-image platformdirs==4.2.2 # via jupyter-core -plotly==5.22.0 +plotly==5.24.0 # via # dash # pymatgen prometheus-client==0.20.0 # via # jupyter-server - # nbclassic # notebook -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython -psutil==5.9.8 +psutil==6.0.0 # via ipykernel ptyprocess==0.7.0 # via # pexpect # terminado -pure-eval==0.2.2 +pure-eval==0.2.3 # via stack-data pybtex==0.24.0 # via @@ -395,38 +351,34 @@ pybtex==0.24.0 # pymatgen pycparser==2.22 # via cffi -pydantic==2.7.1 +pydantic==2.8.2 # via # emmet-core - # fastapi # maggma # pydantic-settings -pydantic-core==2.18.2 +pydantic-core==2.20.1 # via pydantic -pydantic-settings==2.2.1 +pydantic-settings==2.4.0 # via # crystal_toolkit (pyproject.toml) # emmet-core # maggma -pydash==8.0.1 +pydash==8.0.3 # via maggma pygments==2.18.0 # via # ipython # nbconvert - # rich -pymatgen==2024.5.1 +pymatgen==2024.8.9 # via # crystal_toolkit (pyproject.toml) # emmet-core # mp-api -pymongo==4.7.2 - # via - # maggma - # mongogrant +pymongo==4.8.0 + # via maggma pynacl==1.5.0 # via paramiko -pyparsing==3.1.2 +pyparsing==3.1.4 # via matplotlib python-dateutil==2.9.0.post0 # via @@ -437,38 +389,31 @@ python-dateutil==2.9.0.post0 # matplotlib # pandas python-dotenv==1.0.1 - # via - # pydantic-settings - # uvicorn + # via pydantic-settings python-json-logger==2.0.7 # via jupyter-events -python-multipart==0.0.9 - # via fastapi pytz==2024.1 # via pandas -pyyaml==6.0.1 +pyyaml==6.0.2 # via # jupyter-events # pybtex - # uvicorn -pyzmq==26.0.3 +pyzmq==26.2.0 # via # ipykernel # jupyter-client # jupyter-server # maggma - # nbclassic # notebook referencing==0.35.1 # via # jsonschema # jsonschema-specifications # jupyter-events -requests==2.32.2 +requests==2.32.3 # via # dash # jupyterlab-server - # mongogrant # mp-api # pymatgen retrying==1.3.4 @@ -481,9 +426,7 @@ rfc3986-validator==0.1.1 # via # jsonschema # jupyter-events -rich==13.7.1 - # via typer -rpds-py==0.18.1 +rpds-py==0.20.0 # via # jsonschema # referencing @@ -493,13 +436,13 @@ ruamel-yaml==0.18.6 # pymatgen ruamel-yaml-clib==0.2.8 # via ruamel-yaml -s3transfer==0.10.1 +s3transfer==0.10.2 # via boto3 -scikit-image==0.23.2 +scikit-image==0.24.0 # via crystal_toolkit (pyproject.toml) -scikit-learn==1.5.0 +scikit-learn==1.5.1 # via crystal_toolkit (pyproject.toml) -scipy==1.13.1 +scipy==1.14.1 # via # pymatgen # scikit-image @@ -507,14 +450,11 @@ scipy==1.13.1 send2trash==1.8.3 # via # jupyter-server - # nbclassic # notebook sentinels==1.0.0 # via mongomock -shapely==2.0.4 +shapely==2.0.6 # via crystal_toolkit (pyproject.toml) -shellingham==1.5.4 - # via typer six==1.16.0 # via # asttokens @@ -526,47 +466,41 @@ six==1.16.0 smart-open==7.0.4 # via mp-api sniffio==1.3.1 - # via - # anyio - # httpx -soupsieve==2.5 + # via anyio +soupsieve==2.6 # via beautifulsoup4 -spglib==2.4.0 +spglib==2.5.0 # via pymatgen sshtunnel==0.4.0 # via maggma stack-data==0.6.3 # via ipython -starlette==0.37.2 - # via fastapi -sympy==1.12 +sympy==1.13.2 # via pymatgen tabulate==0.9.0 # via pymatgen -tenacity==8.3.0 +tenacity==9.0.0 # via plotly terminado==0.18.1 # via # jupyter-server # jupyter-server-terminals - # nbclassic # notebook threadpoolctl==3.5.0 # via scikit-learn -tifffile==2024.5.22 +tifffile==2024.8.30 # via scikit-image tinycss2==1.3.0 # via nbconvert -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client # jupyter-server # jupyterlab - # nbclassic # notebook # terminado -tqdm==4.66.4 +tqdm==4.66.5 # via # maggma # pymatgen @@ -580,50 +514,35 @@ traitlets==5.14.3 # jupyter-events # jupyter-server # matplotlib-inline - # nbclassic # nbclient # nbconvert # nbformat # notebook -typer==0.12.3 - # via fastapi-cli -types-python-dateutil==2.9.0.20240316 +types-python-dateutil==2.9.0.20240821 # via arrow -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # aiosqlite # dash # emmet-core - # fastapi # ipython # mp-api # pydantic # pydantic-core # pydash - # typer tzdata==2024.1 # via pandas -ujson==5.10.0 - # via fastapi -uncertainties==3.1.7 +uncertainties==3.2.2 # via pymatgen uri-template==1.3.0 # via jsonschema -urllib3==2.2.1 +urllib3==2.2.2 # via # botocore # requests -uvicorn[standard]==0.29.0 - # via - # fastapi - # maggma -uvloop==0.19.0 - # via uvicorn -watchfiles==0.21.0 - # via uvicorn wcwidth==0.2.13 # via prompt-toolkit -webcolors==1.13 +webcolors==24.8.0 # via # crystal_toolkit (pyproject.toml) # jsonschema @@ -633,9 +552,7 @@ webencodings==0.5.1 # tinycss2 websocket-client==1.8.0 # via jupyter-server -websockets==12.0 - # via uvicorn -werkzeug==3.0.3 +werkzeug==3.0.4 # via # dash # flask @@ -647,7 +564,7 @@ y-py==0.6.2 # ypy-websocket ypy-websocket==0.8.4 # via jupyter-server-ydoc -zipp==3.18.2 +zipp==3.20.1 # via importlib-metadata # The following packages are considered to be unsafe in a requirements file: diff --git a/requirements/ubuntu-latest_py3.11_extras.txt b/requirements/ubuntu-latest_py3.11_extras.txt index 077fa4e4..a791bdc1 100644 --- a/requirements/ubuntu-latest_py3.11_extras.txt +++ b/requirements/ubuntu-latest_py3.11_extras.txt @@ -6,9 +6,11 @@ # aiofiles==22.1.0 # via ypy-websocket -aiohttp==3.9.5 +aiohappyeyeballs==2.4.0 + # via aiohttp +aiohttp==3.10.5 # via dephell -aioitertools==0.11.0 +aioitertools==0.12.0 # via maggma aiosignal==1.3.1 # via aiohttp @@ -18,29 +20,24 @@ alabaster==0.7.16 # via sphinx annotated-types==0.7.0 # via pydantic -anyio==4.3.0 - # via - # httpx - # jupyter-server - # starlette - # watchfiles +anyio==4.4.0 + # via jupyter-server argon2-cffi==23.1.0 # via # jupyter-server - # nbclassic # notebook argon2-cffi-bindings==21.2.0 # via argon2-cffi arrow==1.3.0 # via isoduration -ase==3.22.1 +ase==3.23.0 # via # boltztrap2 # dscribe # hiphive asttokens==2.4.1 # via stack-data -attrs==23.2.0 +attrs==24.2.0 # via # aiohttp # dephell @@ -52,32 +49,33 @@ attrs==23.2.0 # dephell-pythons # dephell-shells # dephell-venvs + # jsonlines # jsonschema # outcome # referencing # trio -babel==2.15.0 +babel==2.16.0 # via # jupyterlab-server # sphinx -bcrypt==4.1.3 +bcrypt==4.2.0 # via paramiko beautifulsoup4==4.12.3 # via # dash # gdown # nbconvert -black==24.4.2 +black==24.8.0 # via crystal_toolkit (pyproject.toml) bleach==6.1.0 # via nbconvert blinker==1.8.2 # via flask -boltztrap2==24.1.1 +boltztrap2==24.7.2 # via ifermi -boto3==1.34.111 +boto3==1.35.10 # via maggma -botocore==1.34.111 +botocore==1.35.10 # via # boto3 # s3transfer @@ -85,22 +83,20 @@ cachelib==0.9.0 # via flask-caching cerberus==1.3.5 # via dephell -certifi==2024.2.2 +certifi==2024.8.30 # via # dephell - # httpcore - # httpx # netcdf4 # requests # urllib3 -cffi==1.16.0 +cffi==1.17.0 # via # argon2-cffi-bindings # cryptography # pynacl cfgv==3.4.0 # via pre-commit -cftime==1.6.3 +cftime==1.6.4 # via netcdf4 charset-normalizer==3.3.2 # via requests @@ -111,9 +107,6 @@ click==8.1.7 # distributed # flask # ifermi - # mongogrant - # typer - # uvicorn cloudpickle==3.0.0 # via # dask @@ -124,10 +117,11 @@ comm==0.2.2 # via ipykernel commonmark==0.9.1 # via recommonmark -contourpy==1.2.1 +contourpy==1.3.0 # via matplotlib -cryptography==42.0.7 +cryptography==43.0.0 # via + # dash # paramiko # pyopenssl # urllib3 @@ -135,14 +129,16 @@ crystaltoolkit-extension==0.6.0 # via crystal_toolkit (pyproject.toml) cycler==0.12.1 # via matplotlib -dash[testing]==2.17.0 +cython==3.0.11 + # via boltztrap2 +dash[testing]==2.17.1 # via # crystal_toolkit (pyproject.toml) # dash-extensions # dash-vtk dash-core-components==2.0.0 # via dash -dash-extensions==1.0.15 +dash-extensions==1.0.18 # via crystal_toolkit (pyproject.toml) dash-html-components==2.0.0 # via dash @@ -154,13 +150,13 @@ dash-testing-stub==0.0.2 # via dash dash-vtk==0.0.9 # via crystal_toolkit (pyproject.toml) -dask==2024.5.1 +dask==2024.8.2 # via # distributed # py4dstem dataclass-wizard==0.22.3 # via dash-extensions -debugpy==1.8.1 +debugpy==1.8.5 # via ipykernel decorator==5.1.1 # via ipython @@ -205,11 +201,10 @@ dill==0.3.8 # py4dstem distlib==0.3.8 # via virtualenv -distributed==2024.5.1 +distributed==2024.8.2 # via py4dstem dnspython==2.6.1 # via - # email-validator # maggma # pymongo docutils==0.20.1 @@ -218,29 +213,23 @@ docutils==0.20.1 # recommonmark # sphinx # sphinx-rtd-theme -dscribe==2.1.0 +dscribe==2.1.1 # via crystal_toolkit (pyproject.toml) editorconfig==0.12.4 # via jsbeautifier -email-validator==2.1.1 - # via fastapi -emdfile==0.0.14 +emdfile==0.0.15 # via py4dstem -emmet-core==0.83.6 +emmet-core==0.84.2rc6 # via mp-api entrypoints==0.4 # via # jupyter-client # nbconvert -executing==2.0.1 +executing==2.1.0 # via stack-data -fastapi==0.111.0 - # via maggma -fastapi-cli==0.0.4 - # via fastapi -fastjsonschema==2.19.1 +fastjsonschema==2.20.0 # via nbformat -filelock==3.14.0 +filelock==3.15.4 # via # gdown # virtualenv @@ -248,12 +237,11 @@ flask==3.0.3 # via # dash # flask-caching - # mongogrant flask-caching==2.3.0 # via # crystal_toolkit (pyproject.toml) # dash-extensions -fonttools==4.51.0 +fonttools==4.53.1 # via matplotlib fqdn==1.5.1 # via jsonschema @@ -263,10 +251,8 @@ frozenlist==1.4.1 # via # aiohttp # aiosignal -fsspec==2024.5.0 +fsspec==2024.6.1 # via dask -future==1.0.0 - # via uncertainties gdown==5.2.0 # via py4dstem gevent==24.2.1 @@ -275,13 +261,10 @@ greenlet==3.0.3 # via # gevent # playwright -gunicorn[gevent]==22.0.0 +gunicorn[gevent]==23.0.0 # via crystal_toolkit (pyproject.toml) h11==0.14.0 - # via - # httpcore - # uvicorn - # wsproto + # via wsproto h5py==3.11.0 # via # emdfile @@ -291,47 +274,39 @@ h5py==3.11.0 # py4dstem habanero==1.2.6 # via crystal_toolkit (pyproject.toml) -hdf5plugin==4.4.0 +hdf5plugin==5.0.0 # via py4dstem -hiphive==1.2 +hiphive==1.3.1 # via crystal_toolkit (pyproject.toml) -httpcore==1.0.5 - # via httpx -httptools==0.6.1 - # via uvicorn -httpx==0.27.0 - # via fastapi -identify==2.5.36 +identify==2.6.0 # via pre-commit -idna==3.7 +idna==3.8 # via # anyio - # email-validator - # httpx # jsonschema # requests # trio # urllib3 # yarl -ifermi==0.3.4 +ifermi==0.3.5 # via crystal_toolkit (pyproject.toml) -imageio==2.34.1 +imageio==2.35.1 # via scikit-image imagesize==1.4.1 # via sphinx -importlib-metadata==7.1.0 +importlib-metadata==8.4.0 # via # dash # dask -inflect==7.2.1 +inflect==7.3.1 # via robocrys iniconfig==2.0.0 # via pytest -ipykernel==6.29.4 +ipykernel==6.29.5 # via # nbclassic # notebook -ipython==8.24.0 +ipython==8.27.0 # via # ipykernel # jupyterlab @@ -350,12 +325,10 @@ jinja2==3.1.4 # crystal_toolkit (pyproject.toml) # dephell # distributed - # fastapi # flask # jupyter-server # jupyterlab # jupyterlab-server - # nbclassic # nbconvert # notebook # sphinx @@ -373,9 +346,11 @@ jsbeautifier==1.15.1 # via dash-extensions json5==0.9.25 # via jupyterlab-server -jsonpointer==2.4 +jsonlines==4.0.0 + # via maggma +jsonpointer==3.0.0 # via jsonschema -jsonschema[format-nongpl]==4.22.0 +jsonschema[format-nongpl]==4.23.0 # via # jupyter-events # jupyterlab-server @@ -387,7 +362,6 @@ jupyter-client==7.4.9 # via # ipykernel # jupyter-server - # nbclassic # nbclient # notebook jupyter-core==5.7.2 @@ -396,7 +370,6 @@ jupyter-core==5.7.2 # jupyter-client # jupyter-server # jupyterlab - # nbclassic # nbclient # nbconvert # nbformat @@ -405,12 +378,11 @@ jupyter-events==0.10.0 # via # jupyter-server # jupyter-server-fileid -jupyter-server==2.14.0 +jupyter-server==2.14.2 # via # jupyter-server-fileid # jupyterlab # jupyterlab-server - # nbclassic # notebook-shim jupyter-server-fileid==0.9.2 # via jupyter-server-ydoc @@ -422,36 +394,34 @@ jupyter-ydoc==0.2.5 # via # jupyter-server-ydoc # jupyterlab -jupyterlab==3.6.7 +jupyterlab==3.6.8 # via crystaltoolkit-extension jupyterlab-pygments==0.3.0 # via nbconvert -jupyterlab-server==2.27.2 +jupyterlab-server==2.27.3 # via jupyterlab kaleido==0.2.1 # via crystal_toolkit (pyproject.toml) -kiwisolver==1.4.5 +kiwisolver==1.4.6 # via matplotlib latexcodec==3.0.0 # via pybtex lazy-loader==0.4 # via scikit-image -llvmlite==0.42.0 +llvmlite==0.43.0 # via numba locket==1.0.0 # via # distributed # partd -lxml==5.2.2 +lxml==5.3.0 # via # dash # nbconvert m2r==0.3.1 # via dephell -maggma==0.67.0 +maggma==0.69.3 # via mp-api -markdown-it-py==3.0.0 - # via rich markupsafe==2.1.5 # via # jinja2 @@ -459,7 +429,7 @@ markupsafe==2.1.5 # werkzeug matminer==0.9.2 # via robocrys -matplotlib==3.9.0 +matplotlib==3.9.2 # via # ase # boltztrap2 @@ -472,19 +442,15 @@ matplotlib-inline==0.1.7 # via # ipykernel # ipython -mdurl==0.1.2 - # via markdown-it-py meshcut==0.3.0 # via ifermi mistune==0.8.4 # via # m2r # nbconvert -mongogrant==0.3.3 - # via maggma mongomock==4.1.2 # via maggma -monty==2024.5.15 +monty==2024.7.30 # via # emmet-core # ifermi @@ -493,11 +459,11 @@ monty==2024.5.15 # mp-api # pymatgen # robocrys -more-itertools==9.1.0 +more-itertools==10.4.0 # via # dash-extensions # inflect -mp-api==0.41.2 +mp-api==0.42.1 # via # crystal_toolkit (pyproject.toml) # robocrys @@ -518,7 +484,7 @@ multiprocess==0.70.16 # via dash mypy-extensions==1.0.0 # via black -nbclassic==1.0.0 +nbclassic==1.1.0 # via # jupyterlab # notebook @@ -527,16 +493,14 @@ nbclient==0.10.0 nbconvert==6.5.4 # via # jupyter-server - # nbclassic # notebook nbformat==5.10.4 # via # jupyter-server - # nbclassic # nbclient # nbconvert # notebook -ncempy==1.11.1 +ncempy==1.11.3 # via py4dstem nest-asyncio==1.6.0 # via @@ -545,7 +509,7 @@ nest-asyncio==1.6.0 # jupyter-client # nbclassic # notebook -netcdf4==1.6.5 +netcdf4==1.7.1.post2 # via boltztrap2 networkx==3.3 # via @@ -553,13 +517,13 @@ networkx==3.3 # pymatgen # robocrys # scikit-image -nodeenv==1.8.0 +nodeenv==1.9.1 # via pre-commit notebook==6.5.7 # via jupyterlab notebook-shim==0.2.4 # via nbclassic -numba==0.59.1 +numba==0.60.0 # via # hiphive # sparse @@ -572,6 +536,7 @@ numpy==1.26.4 # contourpy # dscribe # emdfile + # emmet-core # h5py # hiphive # ifermi @@ -600,17 +565,15 @@ numpy==1.26.4 # tifffile # trainstation # trimesh -numpy-stl==3.1.1 +numpy-stl==3.1.2 # via meshcut -orjson==3.10.3 - # via - # fastapi - # maggma +orjson==3.10.7 + # via maggma outcome==1.3.0.post0 # via trio overrides==7.7.0 # via jupyter-server -packaging==24.0 +packaging==24.1 # via # black # dask @@ -639,11 +602,12 @@ palettable==3.3.3 pandas==2.2.2 # via # hiphive + # maggma # matminer # pymatgen pandocfilters==1.5.1 # via nbconvert -paramiko==3.4.0 +paramiko==3.4.1 # via sshtunnel parso==0.8.4 # via jedi @@ -657,7 +621,7 @@ pexpect==4.9.0 # via # dephell-shells # ipython -pillow==10.3.0 +pillow==10.4.0 # via # imageio # matplotlib @@ -667,27 +631,26 @@ platformdirs==4.2.2 # black # jupyter-core # virtualenv -playwright==1.44.0 +playwright==1.46.0 # via # crystal_toolkit (pyproject.toml) # pytest-playwright -plotly==5.22.0 +plotly==5.24.0 # via # dash # ifermi # pymatgen pluggy==1.5.0 # via pytest -pre-commit==3.7.1 +pre-commit==3.8.0 # via crystal_toolkit (pyproject.toml) prometheus-client==0.20.0 # via # jupyter-server - # nbclassic # notebook -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython -psutil==5.9.8 +psutil==6.0.0 # via # dash # distributed @@ -699,14 +662,12 @@ ptyprocess==0.7.0 # terminado pubchempy==1.0.4 # via robocrys -pure-eval==0.2.2 +pure-eval==0.2.3 # via stack-data -py4dstem==0.14.14 +py4dstem==0.14.16 # via crystal_toolkit (pyproject.toml) -pyaml==24.4.0 +pyaml==24.7.0 # via scikit-optimize -pybind11==2.12.0 - # via dscribe pybtex==0.24.0 # via # emmet-core @@ -714,24 +675,24 @@ pybtex==0.24.0 # robocrys pycparser==2.22 # via cffi -pydantic==2.7.1 +pydantic==2.8.2 # via + # dash-extensions # emmet-core - # fastapi # maggma # pydantic-settings -pydantic-core==2.18.2 +pydantic-core==2.20.1 # via pydantic -pydantic-settings==2.2.1 +pydantic-settings==2.4.0 # via # crystal_toolkit (pyproject.toml) # emmet-core # maggma -pydash==8.0.1 +pydash==8.0.3 # via maggma pyee==11.1.0 # via playwright -pyfftw==0.13.1 +pyfftw==0.14.0 # via # crystal_toolkit (pyproject.toml) # ifermi @@ -740,11 +701,10 @@ pygments==2.18.0 # ipython # mpire # nbconvert - # rich # sphinx -pylops==2.2.0 +pylops==2.3.1 # via py4dstem -pymatgen==2024.5.1 +pymatgen==2024.8.9 # via # crystal_toolkit (pyproject.toml) # emmet-core @@ -752,22 +712,21 @@ pymatgen==2024.5.1 # matminer # mp-api # robocrys -pymongo==4.7.2 +pymongo==4.8.0 # via # maggma # matminer - # mongogrant pynacl==1.5.0 # via paramiko -pyopenssl==24.1.0 +pyopenssl==24.2.1 # via urllib3 -pyparsing==3.1.2 +pyparsing==3.1.4 # via matplotlib pysocks==1.7.1 # via # requests # urllib3 -pytest==8.2.1 +pytest==8.3.2 # via # crystal_toolkit (pyproject.toml) # dash @@ -775,7 +734,7 @@ pytest==8.2.1 # pytest-playwright pytest-base-url==2.1.0 # via pytest-playwright -pytest-playwright==0.5.0 +pytest-playwright==0.5.1 # via crystal_toolkit (pyproject.toml) python-dateutil==2.9.0.post0 # via @@ -786,20 +745,16 @@ python-dateutil==2.9.0.post0 # matplotlib # pandas python-dotenv==1.0.1 - # via - # pydantic-settings - # uvicorn + # via pydantic-settings python-json-logger==2.0.7 # via jupyter-events -python-multipart==0.0.9 - # via fastapi python-slugify==8.0.4 # via pytest-playwright python-utils==3.8.2 # via numpy-stl pytz==2024.1 # via pandas -pyyaml==6.0.1 +pyyaml==6.0.2 # via # dask # distributed @@ -807,25 +762,23 @@ pyyaml==6.0.1 # pre-commit # pyaml # pybtex - # uvicorn -pyzmq==26.0.3 +pyzmq==26.2.0 # via # ipykernel # jupyter-client # jupyter-server # maggma - # nbclassic # notebook recommonmark==0.7.1 # via crystal_toolkit (pyproject.toml) -redis==5.0.4 +redis==5.0.8 # via crystal_toolkit (pyproject.toml) referencing==0.35.1 # via # jsonschema # jsonschema-specifications # jupyter-events -requests[security,socks]==2.32.2 +requests[security,socks]==2.32.3 # via # dash # dephell @@ -836,7 +789,6 @@ requests[security,socks]==2.32.2 # habanero # jupyterlab-server # matminer - # mongogrant # mp-api # percy # pymatgen @@ -852,11 +804,9 @@ rfc3986-validator==0.1.1 # via # jsonschema # jupyter-events -rich==13.7.1 - # via typer robocrys==0.2.9 # via crystal_toolkit (pyproject.toml) -rpds-py==0.18.1 +rpds-py==0.20.0 # via # jsonschema # referencing @@ -868,14 +818,16 @@ ruamel-yaml==0.18.6 # robocrys ruamel-yaml-clib==0.2.8 # via ruamel-yaml -s3transfer==0.10.1 +ruff==0.4.10 + # via dash-extensions +s3transfer==0.10.2 # via boto3 -scikit-image==0.23.2 +scikit-image==0.24.0 # via # crystal_toolkit (pyproject.toml) # ifermi # py4dstem -scikit-learn==1.5.0 +scikit-learn==1.4.2 # via # crystal_toolkit (pyproject.toml) # dscribe @@ -884,9 +836,9 @@ scikit-learn==1.5.0 # py4dstem # scikit-optimize # trainstation -scikit-optimize==0.10.1 +scikit-optimize==0.10.2 # via py4dstem -scipy==1.13.1 +scipy==1.14.1 # via # ase # boltztrap2 @@ -909,16 +861,13 @@ selenium==4.2.0 send2trash==1.8.3 # via # jupyter-server - # nbclassic # notebook sentinels==1.0.0 # via mongomock -shapely==2.0.4 +shapely==2.0.6 # via crystal_toolkit (pyproject.toml) shellingham==1.5.4 - # via - # dephell-shells - # typer + # via dephell-shells six==1.16.0 # via # asttokens @@ -933,7 +882,6 @@ smart-open==7.0.4 sniffio==1.3.1 # via # anyio - # httpx # trio snowballstemmer==2.2.0 # via sphinx @@ -941,45 +889,43 @@ sortedcontainers==2.4.0 # via # distributed # trio -soupsieve==2.5 +soupsieve==2.6 # via beautifulsoup4 sparse==0.15.4 # via dscribe -spglib==2.4.0 +spglib==2.5.0 # via # boltztrap2 # hiphive # ifermi # pymatgen # robocrys -sphinx==7.3.7 +sphinx==7.4.7 # via # recommonmark # sphinx-rtd-theme # sphinxcontrib-jquery sphinx-rtd-theme==2.0.0 # via crystal_toolkit (pyproject.toml) -sphinxcontrib-applehelp==1.0.8 +sphinxcontrib-applehelp==2.0.0 # via sphinx -sphinxcontrib-devhelp==1.0.6 +sphinxcontrib-devhelp==2.0.0 # via sphinx -sphinxcontrib-htmlhelp==2.0.5 +sphinxcontrib-htmlhelp==2.1.0 # via sphinx sphinxcontrib-jquery==4.1 # via sphinx-rtd-theme sphinxcontrib-jsmath==1.0.1 # via sphinx -sphinxcontrib-qthelp==1.0.7 +sphinxcontrib-qthelp==2.0.0 # via sphinx -sphinxcontrib-serializinghtml==1.1.10 +sphinxcontrib-serializinghtml==2.0.0 # via sphinx sshtunnel==0.4.0 # via maggma stack-data==0.6.3 # via ipython -starlette==0.37.2 - # via fastapi -sympy==1.12 +sympy==1.13.2 # via # hiphive # matminer @@ -990,7 +936,7 @@ tabulate==0.9.0 # pymatgen tblib==3.0.0 # via distributed -tenacity==8.3.0 +tenacity==9.0.0 # via plotly termcolor==2.3.0 # via yaspin @@ -998,7 +944,6 @@ terminado==0.18.1 # via # jupyter-server # jupyter-server-terminals - # nbclassic # notebook text-unidecode==1.3 # via python-slugify @@ -1006,28 +951,27 @@ threadpoolctl==3.5.0 # via # py4dstem # scikit-learn -tifffile==2024.5.22 +tifffile==2024.8.30 # via scikit-image tinycss2==1.3.0 # via nbconvert -tomlkit==0.12.5 +tomlkit==0.13.2 # via dephell toolz==0.12.1 # via # dask # distributed # partd -tornado==6.4 +tornado==6.4.1 # via # distributed # ipykernel # jupyter-client # jupyter-server # jupyterlab - # nbclassic # notebook # terminado -tqdm==4.66.4 +tqdm==4.66.5 # via # emdfile # gdown @@ -1037,7 +981,7 @@ tqdm==4.66.4 # mpire # py4dstem # pymatgen -trainstation==1.0 +trainstation==1.1 # via hiphive traitlets==5.14.3 # via @@ -1049,32 +993,27 @@ traitlets==5.14.3 # jupyter-events # jupyter-server # matplotlib-inline - # nbclassic # nbclient # nbconvert # nbformat # notebook -trimesh==4.4.0 +trimesh==4.4.8 # via ifermi -trio==0.25.1 +trio==0.26.2 # via # selenium # trio-websocket trio-websocket==0.11.1 # via selenium -typeguard==4.2.1 +typeguard==4.3.0 # via inflect -typer==0.12.3 - # via fastapi-cli -types-python-dateutil==2.9.0.20240316 +types-python-dateutil==2.9.0.20240821 # via arrow -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # aiosqlite # dash # emmet-core - # fastapi - # inflect # ipython # mp-api # pydantic @@ -1083,16 +1022,13 @@ typing-extensions==4.11.0 # pyee # python-utils # typeguard - # typer tzdata==2024.1 # via pandas -ujson==5.10.0 - # via fastapi -uncertainties==3.1.7 +uncertainties==3.2.2 # via pymatgen uri-template==1.3.0 # via jsonschema -urllib3[secure,socks]==1.26.18 +urllib3[secure,socks]==1.26.20 # via # botocore # distributed @@ -1100,23 +1036,15 @@ urllib3[secure,socks]==1.26.18 # selenium urllib3-secure-extra==0.1.0 # via urllib3 -uvicorn[standard]==0.29.0 - # via - # fastapi - # maggma -uvloop==0.19.0 - # via uvicorn -virtualenv==20.26.2 +virtualenv==20.26.3 # via pre-commit -vtk==9.3.0 +vtk==9.3.1 # via dash-vtk waitress==3.0.0 # via dash -watchfiles==0.21.0 - # via uvicorn wcwidth==0.2.13 # via prompt-toolkit -webcolors==1.13 +webcolors==24.8.0 # via # crystal_toolkit (pyproject.toml) # jsonschema @@ -1126,9 +1054,7 @@ webencodings==0.5.1 # tinycss2 websocket-client==1.8.0 # via jupyter-server -websockets==12.0 - # via uvicorn -werkzeug==3.0.3 +werkzeug==3.0.4 # via # dash # flask @@ -1140,7 +1066,7 @@ y-py==0.6.2 # via # jupyter-ydoc # ypy-websocket -yarl==1.9.4 +yarl==1.9.7 # via aiohttp yaspin==3.0.2 # via dephell @@ -1148,11 +1074,11 @@ ypy-websocket==0.8.4 # via jupyter-server-ydoc zict==3.0.0 # via distributed -zipp==3.18.2 +zipp==3.20.1 # via importlib-metadata zope-event==5.0 # via gevent -zope-interface==6.4.post1 +zope-interface==7.0.3 # via gevent # The following packages are considered to be unsafe in a requirements file: From df068b9ddcc4136723d48b96760f09f70368fbb6 Mon Sep 17 00:00:00 2001 From: github-actions Date: Tue, 3 Sep 2024 18:50:24 +0000 Subject: [PATCH 3/3] update dependencies for ubuntu-latest/py3.9 --- requirements/ubuntu-latest_py3.9.txt | 256 +++++--------- requirements/ubuntu-latest_py3.9_extras.txt | 357 ++++++++------------ 2 files changed, 227 insertions(+), 386 deletions(-) diff --git a/requirements/ubuntu-latest_py3.9.txt b/requirements/ubuntu-latest_py3.9.txt index 93b50d59..cc2807a4 100644 --- a/requirements/ubuntu-latest_py3.9.txt +++ b/requirements/ubuntu-latest_py3.9.txt @@ -6,22 +6,17 @@ # aiofiles==22.1.0 # via ypy-websocket -aioitertools==0.11.0 +aioitertools==0.12.0 # via maggma aiosqlite==0.20.0 # via ypy-websocket annotated-types==0.7.0 # via pydantic -anyio==4.3.0 - # via - # httpx - # jupyter-server - # starlette - # watchfiles +anyio==4.4.0 + # via jupyter-server argon2-cffi==23.1.0 # via # jupyter-server - # nbclassic # notebook argon2-cffi-bindings==21.2.0 # via argon2-cffi @@ -29,13 +24,14 @@ arrow==1.3.0 # via isoduration asttokens==2.4.1 # via stack-data -attrs==23.2.0 +attrs==24.2.0 # via + # jsonlines # jsonschema # referencing -babel==2.15.0 +babel==2.16.0 # via jupyterlab-server -bcrypt==4.1.3 +bcrypt==4.2.0 # via paramiko beautifulsoup4==4.12.3 # via nbconvert @@ -43,20 +39,17 @@ bleach==6.1.0 # via nbconvert blinker==1.8.2 # via flask -boto3==1.34.111 +boto3==1.35.10 # via maggma -botocore==1.34.111 +botocore==1.35.10 # via # boto3 # s3transfer cachelib==0.9.0 # via flask-caching -certifi==2024.2.2 - # via - # httpcore - # httpx - # requests -cffi==1.16.0 +certifi==2024.8.30 + # via requests +cffi==1.17.0 # via # argon2-cffi-bindings # cryptography @@ -64,22 +57,18 @@ cffi==1.16.0 charset-normalizer==3.3.2 # via requests click==8.1.7 - # via - # flask - # mongogrant - # typer - # uvicorn + # via flask comm==0.2.2 # via ipykernel -contourpy==1.2.1 +contourpy==1.3.0 # via matplotlib -cryptography==42.0.7 +cryptography==43.0.0 # via paramiko crystaltoolkit-extension==0.6.0 # via crystal_toolkit (pyproject.toml) cycler==0.12.1 # via matplotlib -dash==2.17.0 +dash==2.17.1 # via crystal_toolkit (pyproject.toml) dash-core-components==2.0.0 # via dash @@ -89,7 +78,7 @@ dash-mp-components==0.4.45 # via crystal_toolkit (pyproject.toml) dash-table==5.0.0 # via dash -debugpy==1.8.1 +debugpy==1.8.5 # via ipykernel decorator==5.1.1 # via ipython @@ -97,73 +86,51 @@ defusedxml==0.7.1 # via nbconvert dnspython==2.6.1 # via - # email-validator # maggma # pymongo -email-validator==2.1.1 - # via fastapi -emmet-core==0.83.6 +emmet-core==0.84.2rc6 # via mp-api entrypoints==0.4 # via jupyter-client -exceptiongroup==1.2.1 +exceptiongroup==1.2.2 # via # anyio # ipython -executing==2.0.1 +executing==2.1.0 # via stack-data -fastapi==0.111.0 - # via maggma -fastapi-cli==0.0.4 - # via fastapi -fastjsonschema==2.19.1 +fastjsonschema==2.20.0 # via nbformat flask==3.0.3 # via # dash # flask-caching - # mongogrant flask-caching==2.3.0 # via crystal_toolkit (pyproject.toml) -fonttools==4.51.0 +fonttools==4.53.1 # via matplotlib fqdn==1.5.1 # via jsonschema frozendict==2.4.4 # via crystal_toolkit (pyproject.toml) -future==1.0.0 - # via uncertainties -h11==0.14.0 - # via - # httpcore - # uvicorn -httpcore==1.0.5 - # via httpx -httptools==0.6.1 - # via uvicorn -httpx==0.27.0 - # via fastapi -idna==3.7 +idna==3.8 # via # anyio - # email-validator - # httpx # jsonschema # requests -imageio==2.34.1 +imageio==2.35.1 # via scikit-image -importlib-metadata==7.1.0 +importlib-metadata==8.4.0 # via # dash # flask # jupyter-ydoc # jupyterlab-server # nbconvert -importlib-resources==6.4.0 +importlib-resources==6.4.4 # via # matplotlib # spglib -ipykernel==6.29.4 +ipykernel==6.29.5 # via # nbclassic # notebook @@ -183,12 +150,10 @@ jedi==0.19.1 # via ipython jinja2==3.1.4 # via - # fastapi # flask # jupyter-server # jupyterlab # jupyterlab-server - # nbclassic # nbconvert # notebook jmespath==1.0.1 @@ -201,9 +166,11 @@ joblib==1.4.2 # scikit-learn json5==0.9.25 # via jupyterlab-server -jsonpointer==2.4 +jsonlines==4.0.0 + # via maggma +jsonpointer==3.0.0 # via jsonschema -jsonschema[format-nongpl]==4.22.0 +jsonschema[format-nongpl]==4.23.0 # via # jupyter-events # jupyterlab-server @@ -215,7 +182,6 @@ jupyter-client==7.4.9 # via # ipykernel # jupyter-server - # nbclassic # nbclient # notebook jupyter-core==5.7.2 @@ -224,7 +190,6 @@ jupyter-core==5.7.2 # jupyter-client # jupyter-server # jupyterlab - # nbclassic # nbclient # nbconvert # nbformat @@ -233,12 +198,11 @@ jupyter-events==0.10.0 # via # jupyter-server # jupyter-server-fileid -jupyter-server==2.14.0 +jupyter-server==2.14.2 # via # jupyter-server-fileid # jupyterlab # jupyterlab-server - # nbclassic # notebook-shim jupyter-server-fileid==0.9.2 # via jupyter-server-ydoc @@ -250,48 +214,42 @@ jupyter-ydoc==0.2.5 # via # jupyter-server-ydoc # jupyterlab -jupyterlab==3.6.7 +jupyterlab==3.6.8 # via crystaltoolkit-extension jupyterlab-pygments==0.3.0 # via nbconvert -jupyterlab-server==2.27.2 +jupyterlab-server==2.27.3 # via jupyterlab -kiwisolver==1.4.5 +kiwisolver==1.4.6 # via matplotlib latexcodec==3.0.0 # via pybtex lazy-loader==0.4 # via scikit-image -maggma==0.67.0 +maggma==0.69.3 # via mp-api -markdown-it-py==3.0.0 - # via rich markupsafe==2.1.5 # via # jinja2 # nbconvert # werkzeug -matplotlib==3.9.0 +matplotlib==3.9.2 # via pymatgen matplotlib-inline==0.1.7 # via # ipykernel # ipython -mdurl==0.1.2 - # via markdown-it-py mistune==3.0.2 # via nbconvert -mongogrant==0.3.3 - # via maggma mongomock==4.1.2 # via maggma -monty==2024.5.15 +monty==2024.7.30 # via # emmet-core # maggma # mp-api # pymatgen -mp-api==0.41.2 +mp-api==0.42.1 # via crystal_toolkit (pyproject.toml) mpmath==1.3.0 # via sympy @@ -299,7 +257,7 @@ msgpack==1.0.8 # via # maggma # mp-api -nbclassic==1.0.0 +nbclassic==1.1.0 # via # jupyterlab # notebook @@ -308,12 +266,10 @@ nbclient==0.10.0 nbconvert==7.16.4 # via # jupyter-server - # nbclassic # notebook nbformat==5.10.4 # via # jupyter-server - # nbclassic # nbclient # nbconvert # notebook @@ -335,6 +291,7 @@ notebook-shim==0.2.4 numpy==1.26.4 # via # contourpy + # emmet-core # imageio # maggma # matplotlib @@ -346,13 +303,11 @@ numpy==1.26.4 # shapely # spglib # tifffile -orjson==3.10.3 - # via - # fastapi - # maggma +orjson==3.10.7 + # via maggma overrides==7.7.0 # via jupyter-server -packaging==24.0 +packaging==24.1 # via # ipykernel # jupyter-server @@ -367,40 +322,41 @@ packaging==24.0 palettable==3.3.3 # via pymatgen pandas==2.2.2 - # via pymatgen + # via + # maggma + # pymatgen pandocfilters==1.5.1 # via nbconvert -paramiko==3.4.0 +paramiko==3.4.1 # via sshtunnel parso==0.8.4 # via jedi pexpect==4.9.0 # via ipython -pillow==10.3.0 +pillow==10.4.0 # via # imageio # matplotlib # scikit-image platformdirs==4.2.2 # via jupyter-core -plotly==5.22.0 +plotly==5.24.0 # via # dash # pymatgen prometheus-client==0.20.0 # via # jupyter-server - # nbclassic # notebook -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython -psutil==5.9.8 +psutil==6.0.0 # via ipykernel ptyprocess==0.7.0 # via # pexpect # terminado -pure-eval==0.2.2 +pure-eval==0.2.3 # via stack-data pybtex==0.24.0 # via @@ -408,38 +364,34 @@ pybtex==0.24.0 # pymatgen pycparser==2.22 # via cffi -pydantic==2.7.1 +pydantic==2.8.2 # via # emmet-core - # fastapi # maggma # pydantic-settings -pydantic-core==2.18.2 +pydantic-core==2.20.1 # via pydantic -pydantic-settings==2.2.1 +pydantic-settings==2.4.0 # via # crystal_toolkit (pyproject.toml) # emmet-core # maggma -pydash==8.0.1 +pydash==8.0.3 # via maggma pygments==2.18.0 # via # ipython # nbconvert - # rich -pymatgen==2024.5.1 +pymatgen==2024.8.9 # via # crystal_toolkit (pyproject.toml) # emmet-core # mp-api -pymongo==4.7.2 - # via - # maggma - # mongogrant +pymongo==4.8.0 + # via maggma pynacl==1.5.0 # via paramiko -pyparsing==3.1.2 +pyparsing==3.1.4 # via matplotlib python-dateutil==2.9.0.post0 # via @@ -450,38 +402,31 @@ python-dateutil==2.9.0.post0 # matplotlib # pandas python-dotenv==1.0.1 - # via - # pydantic-settings - # uvicorn + # via pydantic-settings python-json-logger==2.0.7 # via jupyter-events -python-multipart==0.0.9 - # via fastapi pytz==2024.1 # via pandas -pyyaml==6.0.1 +pyyaml==6.0.2 # via # jupyter-events # pybtex - # uvicorn -pyzmq==26.0.3 +pyzmq==26.2.0 # via # ipykernel # jupyter-client # jupyter-server # maggma - # nbclassic # notebook referencing==0.35.1 # via # jsonschema # jsonschema-specifications # jupyter-events -requests==2.32.2 +requests==2.32.3 # via # dash # jupyterlab-server - # mongogrant # mp-api # pymatgen retrying==1.3.4 @@ -494,9 +439,7 @@ rfc3986-validator==0.1.1 # via # jsonschema # jupyter-events -rich==13.7.1 - # via typer -rpds-py==0.18.1 +rpds-py==0.20.0 # via # jsonschema # referencing @@ -506,11 +449,11 @@ ruamel-yaml==0.18.6 # pymatgen ruamel-yaml-clib==0.2.8 # via ruamel-yaml -s3transfer==0.10.1 +s3transfer==0.10.2 # via boto3 -scikit-image==0.22.0 +scikit-image==0.24.0 # via crystal_toolkit (pyproject.toml) -scikit-learn==1.5.0 +scikit-learn==1.5.1 # via crystal_toolkit (pyproject.toml) scipy==1.13.1 # via @@ -520,14 +463,11 @@ scipy==1.13.1 send2trash==1.8.3 # via # jupyter-server - # nbclassic # notebook sentinels==1.0.0 # via mongomock -shapely==2.0.4 +shapely==2.0.6 # via crystal_toolkit (pyproject.toml) -shellingham==1.5.4 - # via typer six==1.16.0 # via # asttokens @@ -539,49 +479,43 @@ six==1.16.0 smart-open==7.0.4 # via mp-api sniffio==1.3.1 - # via - # anyio - # httpx -soupsieve==2.5 + # via anyio +soupsieve==2.6 # via beautifulsoup4 -spglib==2.4.0 +spglib==2.5.0 # via pymatgen sshtunnel==0.4.0 # via maggma stack-data==0.6.3 # via ipython -starlette==0.37.2 - # via fastapi -sympy==1.12 +sympy==1.13.2 # via pymatgen tabulate==0.9.0 # via pymatgen -tenacity==8.3.0 +tenacity==9.0.0 # via plotly terminado==0.18.1 # via # jupyter-server # jupyter-server-terminals - # nbclassic # notebook threadpoolctl==3.5.0 # via scikit-learn -tifffile==2024.5.22 +tifffile==2024.8.30 # via scikit-image tinycss2==1.3.0 # via nbconvert tomli==2.0.1 # via jupyterlab -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client # jupyter-server # jupyterlab - # nbclassic # notebook # terminado -tqdm==4.66.4 +tqdm==4.66.5 # via # maggma # pymatgen @@ -595,54 +529,38 @@ traitlets==5.14.3 # jupyter-events # jupyter-server # matplotlib-inline - # nbclassic # nbclient # nbconvert # nbformat # notebook -typer==0.12.3 - # via fastapi-cli -types-python-dateutil==2.9.0.20240316 +types-python-dateutil==2.9.0.20240821 # via arrow -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # aioitertools # aiosqlite # anyio # dash # emmet-core - # fastapi # ipython # mp-api # pydantic # pydantic-core # pydash - # starlette - # typer - # uvicorn + # spglib tzdata==2024.1 # via pandas -ujson==5.10.0 - # via fastapi -uncertainties==3.1.7 +uncertainties==3.2.2 # via pymatgen uri-template==1.3.0 # via jsonschema -urllib3==1.26.18 +urllib3==1.26.20 # via # botocore # requests -uvicorn[standard]==0.29.0 - # via - # fastapi - # maggma -uvloop==0.19.0 - # via uvicorn -watchfiles==0.21.0 - # via uvicorn wcwidth==0.2.13 # via prompt-toolkit -webcolors==1.13 +webcolors==24.8.0 # via # crystal_toolkit (pyproject.toml) # jsonschema @@ -652,9 +570,7 @@ webencodings==0.5.1 # tinycss2 websocket-client==1.8.0 # via jupyter-server -websockets==12.0 - # via uvicorn -werkzeug==3.0.3 +werkzeug==3.0.4 # via # dash # flask @@ -666,7 +582,7 @@ y-py==0.6.2 # ypy-websocket ypy-websocket==0.8.4 # via jupyter-server-ydoc -zipp==3.18.2 +zipp==3.20.1 # via # importlib-metadata # importlib-resources diff --git a/requirements/ubuntu-latest_py3.9_extras.txt b/requirements/ubuntu-latest_py3.9_extras.txt index 69940343..82699239 100644 --- a/requirements/ubuntu-latest_py3.9_extras.txt +++ b/requirements/ubuntu-latest_py3.9_extras.txt @@ -6,9 +6,11 @@ # aiofiles==22.1.0 # via ypy-websocket -aiohttp==3.9.5 +aiohappyeyeballs==2.4.0 + # via aiohttp +aiohttp==3.10.5 # via dephell -aioitertools==0.11.0 +aioitertools==0.12.0 # via maggma aiosignal==1.3.1 # via aiohttp @@ -18,22 +20,17 @@ alabaster==0.7.16 # via sphinx annotated-types==0.7.0 # via pydantic -anyio==4.3.0 - # via - # httpx - # jupyter-server - # starlette - # watchfiles +anyio==4.4.0 + # via jupyter-server argon2-cffi==23.1.0 # via # jupyter-server - # nbclassic # notebook argon2-cffi-bindings==21.2.0 # via argon2-cffi arrow==1.3.0 # via isoduration -ase==3.22.1 +ase==3.23.0 # via # boltztrap2 # dscribe @@ -44,7 +41,7 @@ async-timeout==4.0.3 # via # aiohttp # redis -attrs==23.2.0 +attrs==24.2.0 # via # aiohttp # dephell @@ -56,32 +53,33 @@ attrs==23.2.0 # dephell-pythons # dephell-shells # dephell-venvs + # jsonlines # jsonschema # outcome # referencing # trio -babel==2.15.0 +babel==2.16.0 # via # jupyterlab-server # sphinx -bcrypt==4.1.3 +bcrypt==4.2.0 # via paramiko beautifulsoup4==4.12.3 # via # dash # gdown # nbconvert -black==24.4.2 +black==24.8.0 # via crystal_toolkit (pyproject.toml) bleach==6.1.0 # via nbconvert blinker==1.8.2 # via flask -boltztrap2==24.1.1 +boltztrap2==24.7.2 # via ifermi -boto3==1.34.111 +boto3==1.35.10 # via maggma -botocore==1.34.111 +botocore==1.35.10 # via # boto3 # s3transfer @@ -89,22 +87,20 @@ cachelib==0.9.0 # via flask-caching cerberus==1.3.5 # via dephell -certifi==2024.2.2 +certifi==2024.8.30 # via # dephell - # httpcore - # httpx # netcdf4 # requests # urllib3 -cffi==1.16.0 +cffi==1.17.0 # via # argon2-cffi-bindings # cryptography # pynacl cfgv==3.4.0 # via pre-commit -cftime==1.6.3 +cftime==1.6.4 # via netcdf4 charset-normalizer==3.3.2 # via requests @@ -115,9 +111,6 @@ click==8.1.7 # distributed # flask # ifermi - # mongogrant - # typer - # uvicorn cloudpickle==3.0.0 # via # dask @@ -128,10 +121,11 @@ comm==0.2.2 # via ipykernel commonmark==0.9.1 # via recommonmark -contourpy==1.2.1 +contourpy==1.3.0 # via matplotlib -cryptography==42.0.7 +cryptography==43.0.0 # via + # dash # paramiko # pyopenssl # urllib3 @@ -139,14 +133,16 @@ crystaltoolkit-extension==0.6.0 # via crystal_toolkit (pyproject.toml) cycler==0.12.1 # via matplotlib -dash[testing]==2.17.0 +cython==3.0.11 + # via boltztrap2 +dash[testing]==2.17.1 # via # crystal_toolkit (pyproject.toml) # dash-extensions # dash-vtk dash-core-components==2.0.0 # via dash -dash-extensions==1.0.15 +dash-extensions==1.0.18 # via crystal_toolkit (pyproject.toml) dash-html-components==2.0.0 # via dash @@ -158,13 +154,13 @@ dash-testing-stub==0.0.2 # via dash dash-vtk==0.0.9 # via crystal_toolkit (pyproject.toml) -dask==2024.5.1 +dask==2024.8.0 # via # distributed # py4dstem dataclass-wizard==0.22.3 # via dash-extensions -debugpy==1.8.1 +debugpy==1.8.5 # via ipykernel decorator==5.1.1 # via ipython @@ -209,11 +205,10 @@ dill==0.3.8 # py4dstem distlib==0.3.8 # via virtualenv -distributed==2024.5.1 +distributed==2024.8.0 # via py4dstem dnspython==2.6.1 # via - # email-validator # maggma # pymongo docutils==0.20.1 @@ -222,36 +217,30 @@ docutils==0.20.1 # recommonmark # sphinx # sphinx-rtd-theme -dscribe==2.1.0 +dscribe==2.1.1 # via crystal_toolkit (pyproject.toml) editorconfig==0.12.4 # via jsbeautifier -email-validator==2.1.1 - # via fastapi -emdfile==0.0.14 +emdfile==0.0.15 # via py4dstem -emmet-core==0.83.6 +emmet-core==0.84.2rc6 # via mp-api entrypoints==0.4 # via # jupyter-client # nbconvert -exceptiongroup==1.2.1 +exceptiongroup==1.2.2 # via # anyio # ipython # pytest # trio # trio-websocket -executing==2.0.1 +executing==2.1.0 # via stack-data -fastapi==0.111.0 - # via maggma -fastapi-cli==0.0.4 - # via fastapi -fastjsonschema==2.19.1 +fastjsonschema==2.20.0 # via nbformat -filelock==3.14.0 +filelock==3.15.4 # via # gdown # virtualenv @@ -259,12 +248,11 @@ flask==3.0.3 # via # dash # flask-caching - # mongogrant flask-caching==2.3.0 # via # crystal_toolkit (pyproject.toml) # dash-extensions -fonttools==4.51.0 +fonttools==4.53.1 # via matplotlib fqdn==1.5.1 # via jsonschema @@ -274,10 +262,8 @@ frozenlist==1.4.1 # via # aiohttp # aiosignal -fsspec==2024.5.0 +fsspec==2024.6.1 # via dask -future==1.0.0 - # via uncertainties gdown==5.2.0 # via py4dstem gevent==24.2.1 @@ -286,13 +272,10 @@ greenlet==3.0.3 # via # gevent # playwright -gunicorn[gevent]==22.0.0 +gunicorn[gevent]==23.0.0 # via crystal_toolkit (pyproject.toml) h11==0.14.0 - # via - # httpcore - # uvicorn - # wsproto + # via wsproto h5py==3.11.0 # via # emdfile @@ -302,35 +285,27 @@ h5py==3.11.0 # py4dstem habanero==1.2.6 # via crystal_toolkit (pyproject.toml) -hdf5plugin==4.4.0 +hdf5plugin==5.0.0 # via py4dstem -hiphive==1.2 +hiphive==1.3.1 # via crystal_toolkit (pyproject.toml) -httpcore==1.0.5 - # via httpx -httptools==0.6.1 - # via uvicorn -httpx==0.27.0 - # via fastapi -identify==2.5.36 +identify==2.6.0 # via pre-commit -idna==3.7 +idna==3.8 # via # anyio - # email-validator - # httpx # jsonschema # requests # trio # urllib3 # yarl -ifermi==0.3.4 +ifermi==0.3.5 # via crystal_toolkit (pyproject.toml) -imageio==2.34.1 +imageio==2.35.1 # via scikit-image imagesize==1.4.1 # via sphinx -importlib-metadata==7.1.0 +importlib-metadata==8.4.0 # via # dash # dask @@ -339,15 +314,15 @@ importlib-metadata==7.1.0 # jupyterlab-server # sphinx # typeguard -importlib-resources==6.4.0 +importlib-resources==6.4.4 # via # matplotlib # spglib -inflect==7.2.1 +inflect==7.3.1 # via robocrys iniconfig==2.0.0 # via pytest -ipykernel==6.29.4 +ipykernel==6.29.5 # via # nbclassic # notebook @@ -370,12 +345,10 @@ jinja2==3.1.4 # crystal_toolkit (pyproject.toml) # dephell # distributed - # fastapi # flask # jupyter-server # jupyterlab # jupyterlab-server - # nbclassic # nbconvert # notebook # sphinx @@ -393,9 +366,11 @@ jsbeautifier==1.15.1 # via dash-extensions json5==0.9.25 # via jupyterlab-server -jsonpointer==2.4 +jsonlines==4.0.0 + # via maggma +jsonpointer==3.0.0 # via jsonschema -jsonschema[format-nongpl]==4.22.0 +jsonschema[format-nongpl]==4.23.0 # via # jupyter-events # jupyterlab-server @@ -407,7 +382,6 @@ jupyter-client==7.4.9 # via # ipykernel # jupyter-server - # nbclassic # nbclient # notebook jupyter-core==5.7.2 @@ -416,7 +390,6 @@ jupyter-core==5.7.2 # jupyter-client # jupyter-server # jupyterlab - # nbclassic # nbclient # nbconvert # nbformat @@ -425,12 +398,11 @@ jupyter-events==0.10.0 # via # jupyter-server # jupyter-server-fileid -jupyter-server==2.14.0 +jupyter-server==2.14.2 # via # jupyter-server-fileid # jupyterlab # jupyterlab-server - # nbclassic # notebook-shim jupyter-server-fileid==0.9.2 # via jupyter-server-ydoc @@ -442,36 +414,34 @@ jupyter-ydoc==0.2.5 # via # jupyter-server-ydoc # jupyterlab -jupyterlab==3.6.7 +jupyterlab==3.6.8 # via crystaltoolkit-extension jupyterlab-pygments==0.3.0 # via nbconvert -jupyterlab-server==2.27.2 +jupyterlab-server==2.27.3 # via jupyterlab kaleido==0.2.1 # via crystal_toolkit (pyproject.toml) -kiwisolver==1.4.5 +kiwisolver==1.4.6 # via matplotlib latexcodec==3.0.0 # via pybtex lazy-loader==0.4 # via scikit-image -llvmlite==0.42.0 +llvmlite==0.43.0 # via numba locket==1.0.0 # via # distributed # partd -lxml==5.2.2 +lxml==5.3.0 # via # dash # nbconvert m2r==0.3.1 # via dephell -maggma==0.67.0 +maggma==0.69.3 # via mp-api -markdown-it-py==3.0.0 - # via rich markupsafe==2.1.5 # via # jinja2 @@ -479,7 +449,7 @@ markupsafe==2.1.5 # werkzeug matminer==0.9.2 # via robocrys -matplotlib==3.9.0 +matplotlib==3.9.2 # via # ase # boltztrap2 @@ -492,19 +462,15 @@ matplotlib-inline==0.1.7 # via # ipykernel # ipython -mdurl==0.1.2 - # via markdown-it-py meshcut==0.3.0 # via ifermi mistune==0.8.4 # via # m2r # nbconvert -mongogrant==0.3.3 - # via maggma mongomock==4.1.2 # via maggma -monty==2024.5.15 +monty==2024.7.30 # via # emmet-core # ifermi @@ -513,11 +479,11 @@ monty==2024.5.15 # mp-api # pymatgen # robocrys -more-itertools==9.1.0 +more-itertools==10.4.0 # via # dash-extensions # inflect -mp-api==0.41.2 +mp-api==0.42.1 # via # crystal_toolkit (pyproject.toml) # robocrys @@ -538,7 +504,7 @@ multiprocess==0.70.16 # via dash mypy-extensions==1.0.0 # via black -nbclassic==1.0.0 +nbclassic==1.1.0 # via # jupyterlab # notebook @@ -547,16 +513,14 @@ nbclient==0.10.0 nbconvert==6.5.4 # via # jupyter-server - # nbclassic # notebook nbformat==5.10.4 # via # jupyter-server - # nbclassic # nbclient # nbconvert # notebook -ncempy==1.11.1 +ncempy==1.11.3 # via py4dstem nest-asyncio==1.6.0 # via @@ -565,7 +529,7 @@ nest-asyncio==1.6.0 # jupyter-client # nbclassic # notebook -netcdf4==1.6.5 +netcdf4==1.7.1.post2 # via boltztrap2 networkx==3.2.1 # via @@ -573,13 +537,13 @@ networkx==3.2.1 # pymatgen # robocrys # scikit-image -nodeenv==1.8.0 +nodeenv==1.9.1 # via pre-commit notebook==6.5.7 # via jupyterlab notebook-shim==0.2.4 # via nbclassic -numba==0.59.1 +numba==0.60.0 # via # hiphive # sparse @@ -592,6 +556,7 @@ numpy==1.26.4 # contourpy # dscribe # emdfile + # emmet-core # h5py # hiphive # ifermi @@ -620,17 +585,15 @@ numpy==1.26.4 # tifffile # trainstation # trimesh -numpy-stl==3.1.1 +numpy-stl==3.1.2 # via meshcut -orjson==3.10.3 - # via - # fastapi - # maggma +orjson==3.10.7 + # via maggma outcome==1.3.0.post0 # via trio overrides==7.7.0 # via jupyter-server -packaging==24.0 +packaging==24.1 # via # black # dask @@ -659,11 +622,12 @@ palettable==3.3.3 pandas==2.2.2 # via # hiphive + # maggma # matminer # pymatgen pandocfilters==1.5.1 # via nbconvert -paramiko==3.4.0 +paramiko==3.4.1 # via sshtunnel parso==0.8.4 # via jedi @@ -677,7 +641,7 @@ pexpect==4.9.0 # via # dephell-shells # ipython -pillow==10.3.0 +pillow==10.4.0 # via # imageio # matplotlib @@ -687,27 +651,26 @@ platformdirs==4.2.2 # black # jupyter-core # virtualenv -playwright==1.44.0 +playwright==1.46.0 # via # crystal_toolkit (pyproject.toml) # pytest-playwright -plotly==5.22.0 +plotly==5.24.0 # via # dash # ifermi # pymatgen pluggy==1.5.0 # via pytest -pre-commit==3.7.1 +pre-commit==3.8.0 # via crystal_toolkit (pyproject.toml) prometheus-client==0.20.0 # via # jupyter-server - # nbclassic # notebook -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython -psutil==5.9.8 +psutil==6.0.0 # via # dash # distributed @@ -719,14 +682,12 @@ ptyprocess==0.7.0 # terminado pubchempy==1.0.4 # via robocrys -pure-eval==0.2.2 +pure-eval==0.2.3 # via stack-data py4dstem==0.14.8 # via crystal_toolkit (pyproject.toml) -pyaml==24.4.0 +pyaml==24.7.0 # via scikit-optimize -pybind11==2.12.0 - # via dscribe pybtex==0.24.0 # via # emmet-core @@ -734,24 +695,24 @@ pybtex==0.24.0 # robocrys pycparser==2.22 # via cffi -pydantic==2.7.1 +pydantic==2.8.2 # via + # dash-extensions # emmet-core - # fastapi # maggma # pydantic-settings -pydantic-core==2.18.2 +pydantic-core==2.20.1 # via pydantic -pydantic-settings==2.2.1 +pydantic-settings==2.4.0 # via # crystal_toolkit (pyproject.toml) # emmet-core # maggma -pydash==8.0.1 +pydash==8.0.3 # via maggma pyee==11.1.0 # via playwright -pyfftw==0.13.1 +pyfftw==0.14.0 # via # crystal_toolkit (pyproject.toml) # ifermi @@ -760,11 +721,10 @@ pygments==2.18.0 # ipython # mpire # nbconvert - # rich # sphinx -pylops==2.2.0 +pylops==2.3.1 # via py4dstem -pymatgen==2024.5.1 +pymatgen==2024.8.9 # via # crystal_toolkit (pyproject.toml) # emmet-core @@ -772,22 +732,21 @@ pymatgen==2024.5.1 # matminer # mp-api # robocrys -pymongo==4.7.2 +pymongo==4.8.0 # via # maggma # matminer - # mongogrant pynacl==1.5.0 # via paramiko -pyopenssl==24.1.0 +pyopenssl==24.2.1 # via urllib3 -pyparsing==3.1.2 +pyparsing==3.1.4 # via matplotlib pysocks==1.7.1 # via # requests # urllib3 -pytest==8.2.1 +pytest==8.3.2 # via # crystal_toolkit (pyproject.toml) # dash @@ -795,7 +754,7 @@ pytest==8.2.1 # pytest-playwright pytest-base-url==2.1.0 # via pytest-playwright -pytest-playwright==0.5.0 +pytest-playwright==0.5.1 # via crystal_toolkit (pyproject.toml) python-dateutil==2.9.0.post0 # via @@ -806,20 +765,16 @@ python-dateutil==2.9.0.post0 # matplotlib # pandas python-dotenv==1.0.1 - # via - # pydantic-settings - # uvicorn + # via pydantic-settings python-json-logger==2.0.7 # via jupyter-events -python-multipart==0.0.9 - # via fastapi python-slugify==8.0.4 # via pytest-playwright python-utils==3.8.2 # via numpy-stl pytz==2024.1 # via pandas -pyyaml==6.0.1 +pyyaml==6.0.2 # via # dask # distributed @@ -827,25 +782,23 @@ pyyaml==6.0.1 # pre-commit # pyaml # pybtex - # uvicorn -pyzmq==26.0.3 +pyzmq==26.2.0 # via # ipykernel # jupyter-client # jupyter-server # maggma - # nbclassic # notebook recommonmark==0.7.1 # via crystal_toolkit (pyproject.toml) -redis==5.0.4 +redis==5.0.8 # via crystal_toolkit (pyproject.toml) referencing==0.35.1 # via # jsonschema # jsonschema-specifications # jupyter-events -requests[security,socks]==2.32.2 +requests[security,socks]==2.32.3 # via # dash # dephell @@ -856,7 +809,6 @@ requests[security,socks]==2.32.2 # habanero # jupyterlab-server # matminer - # mongogrant # mp-api # percy # pymatgen @@ -872,11 +824,9 @@ rfc3986-validator==0.1.1 # via # jsonschema # jupyter-events -rich==13.7.1 - # via typer robocrys==0.2.9 # via crystal_toolkit (pyproject.toml) -rpds-py==0.18.1 +rpds-py==0.20.0 # via # jsonschema # referencing @@ -888,14 +838,16 @@ ruamel-yaml==0.18.6 # robocrys ruamel-yaml-clib==0.2.8 # via ruamel-yaml -s3transfer==0.10.1 +ruff==0.4.10 + # via dash-extensions +s3transfer==0.10.2 # via boto3 -scikit-image==0.22.0 +scikit-image==0.24.0 # via # crystal_toolkit (pyproject.toml) # ifermi # py4dstem -scikit-learn==1.5.0 +scikit-learn==1.5.1 # via # crystal_toolkit (pyproject.toml) # dscribe @@ -904,7 +856,7 @@ scikit-learn==1.5.0 # py4dstem # scikit-optimize # trainstation -scikit-optimize==0.10.1 +scikit-optimize==0.10.2 # via py4dstem scipy==1.13.1 # via @@ -929,16 +881,13 @@ selenium==4.2.0 send2trash==1.8.3 # via # jupyter-server - # nbclassic # notebook sentinels==1.0.0 # via mongomock -shapely==2.0.4 +shapely==2.0.6 # via crystal_toolkit (pyproject.toml) shellingham==1.5.4 - # via - # dephell-shells - # typer + # via dephell-shells six==1.16.0 # via # asttokens @@ -953,7 +902,6 @@ smart-open==7.0.4 sniffio==1.3.1 # via # anyio - # httpx # trio snowballstemmer==2.2.0 # via sphinx @@ -961,45 +909,43 @@ sortedcontainers==2.4.0 # via # distributed # trio -soupsieve==2.5 +soupsieve==2.6 # via beautifulsoup4 sparse==0.15.4 # via dscribe -spglib==2.4.0 +spglib==2.5.0 # via # boltztrap2 # hiphive # ifermi # pymatgen # robocrys -sphinx==7.3.7 +sphinx==7.4.7 # via # recommonmark # sphinx-rtd-theme # sphinxcontrib-jquery sphinx-rtd-theme==2.0.0 # via crystal_toolkit (pyproject.toml) -sphinxcontrib-applehelp==1.0.8 +sphinxcontrib-applehelp==2.0.0 # via sphinx -sphinxcontrib-devhelp==1.0.6 +sphinxcontrib-devhelp==2.0.0 # via sphinx -sphinxcontrib-htmlhelp==2.0.5 +sphinxcontrib-htmlhelp==2.1.0 # via sphinx sphinxcontrib-jquery==4.1 # via sphinx-rtd-theme sphinxcontrib-jsmath==1.0.1 # via sphinx -sphinxcontrib-qthelp==1.0.7 +sphinxcontrib-qthelp==2.0.0 # via sphinx -sphinxcontrib-serializinghtml==1.1.10 +sphinxcontrib-serializinghtml==2.0.0 # via sphinx sshtunnel==0.4.0 # via maggma stack-data==0.6.3 # via ipython -starlette==0.37.2 - # via fastapi -sympy==1.12 +sympy==1.13.2 # via # hiphive # matminer @@ -1010,7 +956,7 @@ tabulate==0.9.0 # pymatgen tblib==3.0.0 # via distributed -tenacity==8.3.0 +tenacity==9.0.0 # via plotly termcolor==2.3.0 # via yaspin @@ -1018,7 +964,6 @@ terminado==0.18.1 # via # jupyter-server # jupyter-server-terminals - # nbclassic # notebook text-unidecode==1.3 # via python-slugify @@ -1026,7 +971,7 @@ threadpoolctl==3.5.0 # via # py4dstem # scikit-learn -tifffile==2024.5.22 +tifffile==2024.8.30 # via scikit-image tinycss2==1.3.0 # via nbconvert @@ -1036,24 +981,23 @@ tomli==2.0.1 # jupyterlab # pytest # sphinx -tomlkit==0.12.5 +tomlkit==0.13.2 # via dephell toolz==0.12.1 # via # dask # distributed # partd -tornado==6.4 +tornado==6.4.1 # via # distributed # ipykernel # jupyter-client # jupyter-server # jupyterlab - # nbclassic # notebook # terminado -tqdm==4.66.4 +tqdm==4.66.5 # via # emdfile # gdown @@ -1063,7 +1007,7 @@ tqdm==4.66.4 # mpire # py4dstem # pymatgen -trainstation==1.0 +trainstation==1.1 # via hiphive traitlets==5.14.3 # via @@ -1075,26 +1019,23 @@ traitlets==5.14.3 # jupyter-events # jupyter-server # matplotlib-inline - # nbclassic # nbclient # nbconvert # nbformat # notebook -trimesh==4.4.0 +trimesh==4.4.8 # via ifermi -trio==0.25.1 +trio==0.26.2 # via # selenium # trio-websocket trio-websocket==0.11.1 # via selenium -typeguard==4.2.1 +typeguard==4.3.0 # via inflect -typer==0.12.3 - # via fastapi-cli -types-python-dateutil==2.9.0.20240316 +types-python-dateutil==2.9.0.20240821 # via arrow -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # aioitertools # aiosqlite @@ -1103,8 +1044,6 @@ typing-extensions==4.11.0 # dash # dataclass-wizard # emmet-core - # fastapi - # inflect # ipython # mp-api # pydantic @@ -1112,19 +1051,15 @@ typing-extensions==4.11.0 # pydash # pyee # python-utils - # starlette + # spglib # typeguard - # typer - # uvicorn tzdata==2024.1 # via pandas -ujson==5.10.0 - # via fastapi -uncertainties==3.1.7 +uncertainties==3.2.2 # via pymatgen uri-template==1.3.0 # via jsonschema -urllib3[secure,socks]==1.26.18 +urllib3[secure,socks]==1.26.20 # via # botocore # distributed @@ -1132,23 +1067,15 @@ urllib3[secure,socks]==1.26.18 # selenium urllib3-secure-extra==0.1.0 # via urllib3 -uvicorn[standard]==0.29.0 - # via - # fastapi - # maggma -uvloop==0.19.0 - # via uvicorn -virtualenv==20.26.2 +virtualenv==20.26.3 # via pre-commit -vtk==9.3.0 +vtk==9.3.1 # via dash-vtk waitress==3.0.0 # via dash -watchfiles==0.21.0 - # via uvicorn wcwidth==0.2.13 # via prompt-toolkit -webcolors==1.13 +webcolors==24.8.0 # via # crystal_toolkit (pyproject.toml) # jsonschema @@ -1158,9 +1085,7 @@ webencodings==0.5.1 # tinycss2 websocket-client==1.8.0 # via jupyter-server -websockets==12.0 - # via uvicorn -werkzeug==3.0.3 +werkzeug==3.0.4 # via # dash # flask @@ -1172,7 +1097,7 @@ y-py==0.6.2 # via # jupyter-ydoc # ypy-websocket -yarl==1.9.4 +yarl==1.9.7 # via aiohttp yaspin==3.0.2 # via dephell @@ -1180,13 +1105,13 @@ ypy-websocket==0.8.4 # via jupyter-server-ydoc zict==3.0.0 # via distributed -zipp==3.18.2 +zipp==3.20.1 # via # importlib-metadata # importlib-resources zope-event==5.0 # via gevent -zope-interface==6.4.post1 +zope-interface==7.0.3 # via gevent # The following packages are considered to be unsafe in a requirements file: