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genome assignment rates in allele-specific mRNA-seq as reported by MulitQC are incorrect #833

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katsikora opened this issue Aug 22, 2022 · 2 comments
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genome assignment rates in allele-specific mRNA-seq as reported by MulitQC are incorrect #833

katsikora opened this issue Aug 22, 2022 · 2 comments
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bug External Tool An update/modification of an external tool is needed RNA-seq

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@katsikora
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MultiQC reports assignment rates 30-50%, while SNPsplit report shows 3-5%. Check what's causing that and fix.
@katsikora katsikora added bug RNA-seq External Tool An update/modification of an external tool is needed labels Aug 22, 2022
@katsikora
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Clarification: the original MultiQC report includes fragment assignment rates to features, NOT genome assignment rates.
MultiQC-compatible SNPsplit report.yaml files containing read assignment rates to genomes will be added to the multiQC report in a PR.

@katsikora katsikora mentioned this issue Sep 20, 2022
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implemented in release 2.6.0

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bug External Tool An update/modification of an external tool is needed RNA-seq
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