From b17fa4757ac502856aadc7a62f6c278d1879c757 Mon Sep 17 00:00:00 2001
From: AnjuniPeiris <36428247+AnjuniPeiris@users.noreply.github.com>
Date: Tue, 8 May 2018 10:13:20 +1000
Subject: [PATCH] added smrtlink module

---
 smrtlink_on_nci | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

diff --git a/smrtlink_on_nci b/smrtlink_on_nci
index 1d367a2..bfb86dc 100644
--- a/smrtlink_on_nci
+++ b/smrtlink_on_nci
@@ -120,3 +120,24 @@ Detected the following settings:
       PBS_BINDIR        (from 'PATH environment variable, default')
       PBS_QUEUE         (from 'default')
       PBS_STARTARGS     (from 'default')
+
+#write a module file
+
+cd ~/mymodules/
+mkdir smrtlink
+cd smrtlink/
+vim 5.1.0
+
+#paste this to make module
+#%Module1.0#####################################################################
+source /opt/Modules/extensions/extensions.tcl
+proc ModulesHelp { } {
+        puts stderr "\tAdds smrtlink bin directory to the path"
+}
+module-whatis    "smrtlink"
+
+#soft-prereq python/2.7.6
+
+#set kineticsToolsversion 1.2.1 #no version yet
+prepend-path PATH /short/sd34/ap5514/myapps/smrtlink/5.1.0/install/smrtlink-release_5.1.0.26412/bundles/smrttools/smrtcmds/bin
+#prepend-path PYTHONPATH /short/sd34/ap5514/myapps/kineticsTools/lib/python2.7/site-packages