mco_head.ttl

@prefix rdf:   <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs:  <http://www.w3.org/2000/01/rdf-schema#> .
@prefix owl:   <http://www.w3.org/2002/07/owl#> .
@prefix xsd:   <http://www.w3.org/2001/XMLSchema#> .
@prefix dct:   <http://purl.org/dc/terms/> .
@prefix skos:  <http://www.w3.org/2004/02/skos/core#> .
@prefix obo:   <http://purl.obolibrary.org/obo/> .
@prefix faldo: <http://biohackathon.org/resource/faldo#> .
@prefix mco:   <http://identifiers.org/mco/> .

# Base classes and properties

<http://identifiers.org/mco/>
	rdf:type	owl:Ontology ;
	dct:license	<http://creativecommons.org/publicdomain/zero/1.0/> ;
	rdfs:seeAlso	<https://github.com/med2rdf/mco/> ;
	rdfs:seeAlso	<http://biohackathon.org/resource/mco/> ;
	owl:versionInfo "2024-09-13"^^xsd:date .

mco:MouseChromosome
	rdf:type	owl:Class ;
	rdfs:label	"Mouse chromosome" ;
	skos:definition	"Collection of mouse chromosomes" ;
	rdfs:seeAlso	<http://identifiers.org/taxonomy/10090> ;
	skos:broader	obo:SO_0000340 .    # chromosome

mco:MouseGenomeBuild
	rdf:type	owl:Class ;
	rdfs:label	"Mouse genome build" ;
	skos:definition	"Version of a mouse genome assembly" ;
	skos:broader	obo:SO_0001505 .    # reference_genome

mco:build
	rdf:type	owl:ObjectProperty ;
	rdfs:label	"build" ;
	rdfs:domain	mco:MouseChromosome ;
	rdfs:range	mco:MouseGenomeBuild .

mco:insdc
	rdf:type	owl:ObjectProperty ;
	rdfs:label	"INSDC" ;
	rdfs:domain	mco:MouseChromosome ;
	rdfs:range	rdfs:Resource .

mco:refseq
	rdf:type	owl:ObjectProperty ;
	rdfs:label	"RefSeq" ;
	rdfs:domain	mco:MouseChromosome ;
	rdfs:range	rdfs:Resource .

mco:ucsc
	rdf:type	owl:ObjectProperty ;
	rdfs:label	"UCSC" ;
	rdfs:domain	mco:MouseChromosome ;
	rdfs:range	rdfs:Resource .

mco:ensembl
	rdf:type	owl:ObjectProperty ;
	rdfs:label	"Ensembl" ;
	rdfs:domain	mco:MouseChromosome ;
	rdfs:range	rdfs:Resource .

mco:length
	rdf:type	owl:DatatypeProperty ;
	rdfs:label	"length" ;
	rdfs:domain	mco:MouseGenomeBuild ;
	rdfs:range	xsd:integer .

# Mouse genome build classes and instances

mco:GRCm39
	rdf:type	owl:Class ;
	rdfs:label	"GRCm39" ;
	skos:definition	"Genome Reference Consortium Mouse Build 39" ;
	skos:altLabel	"mm39" ;
	rdfs:subClassOf	mco:MouseGenomeBuild .

mco:GRCm38
	rdf:type	owl:Class ;
	rdfs:label	"GRCm38" ;
	skos:definition	"Genome Reference Consortium Mouse Build 38" ;
	skos:altLabel	"mm10" ;
	rdfs:subClassOf	mco:MouseGenomeBuild .

# Mouse chromosome classes and instances