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_pkgdown.yml
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/
_pkgdown.yml
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navbar:
structure:
left:
- home
- intro
- reference
- articles
- tutorials
- news
right: github
components:
home:
icon: fas fa-home fa-lg
href: index.html
reference:
text: Reference
href: reference/index.html
news:
text: Changelog
href: news/index.html
github:
icon: fab fa-github fa-lg
href: https://github.com/meerapatelmd/chariot/
articles:
text: Articles
menu:
- text: Taxonomy and Relationships
href: articles/taxonomy-and-relationships.html
- text: Explore 'Maps to' Relationship
href: articles/explore-maps-to-relationship.html
- text: Explore Relationships and Ancestors
href: articles/explore-relationships-and-ancestors.html
- text: Explore Vocabulary Relationships and Ancestors
href: articles/explore-vocabulary-relationships-and-ancestors.html
- text: Harmonizing HemOnc Concepts
href: articles/harmonizing-hemonc-concepts.html
- text: Mapping to HemOnc
href: articles/mapping-to-hemonc.html
- text: Pivot Concept Ancestors and Descendants
href: articles/pivot-concept-ancestor.html
- text: Pivot Concept Relationships
href: articles/pivot-concept-relationships.html
- text: Setup Drug Strength
href: articles/setup-drug-strength.html
- text: String Manipulation
href: articles/string-manipulation.html
reference:
- title: Connection
desc: >
Connect and Disconnect a Local "Athena" Postgres Database
contents:
- connectAthena
- dcAthena
- title: Concept Class Object
desc: >
Operations related to Concept Class objects
contents:
- get_concept
- contains('name_cluster')
- title: Join
desc: >
Join a dataframe to a OMOP Vocabulary table
contents:
- starts_with('join_for_')
- starts_with('join_on_')
- title: Concept Hierarchy
desc: >
Visualize a concept hierarachy
contents:
- print_concept_hierarchy
- print_concept_siblings
- title: Lookup Concept
desc: >
Lookup concept details in the OMOP Vocabulary
contents:
- starts_with('lookup_')
- title: Lookup Vocabulary
desc: >
Lookup vocabulary-level details in the OMOP Vocabulary
contents:
- starts_with('vocab_')
- title: Search
desc: >
Search for a phrase in the OMOP Vocabulary
contents:
- search_code
- search_ends_with_phrase
- search_exact_phrase
- search_like_phrase
- search_split_phrase
- search_starts_with_phrase
- title: List Metadata
desc: >
List pre-built atomic vectors of CDM Metadata
contents:
- starts_with('list_')
- title: Get
desc: >
Get real-time Data and Metadata
contents:
- starts_with('get_')
- title: HemOnc
desc: >
Lookup HemOnc Concepts by leveraging the HemOnc ontology
contents:
- starts_with('ho_')
- title: Drug Strength Calculations
desc: >
Process the Drug Strength table to stage exposure calculations
contents:
- starts_with('ds_')
- title: Concept Formatting
desc: >
Format concepts and their attributes
contents:
- label_to_strip
- strip_to_label
- merge_label
- merge_strip
- unmerge_label
- unmerge_strip
- unbox_label
- unbox_strip
- title: Filter Strip Format
desc: >
Wrappers around dplyr's `filter` functions to filter `strip` style columns
contents:
- filter_at_all_strip
- filter_at_any_strip
- filter_strip
- title: String Manipulation
desc: >
Manipulate character strings for mapping use cases
contents:
- starts_with('process_')