From 977f9234c8f9fdb4d4dbbc3dccf74e6ae709168f Mon Sep 17 00:00:00 2001
From: Niklaus Johner <niklaus.johner@a3.epfl.ch>
Date: Thu, 18 Jan 2024 17:36:23 +0100
Subject: [PATCH 1/2] Fix hmm link representation in AMR details view.

---
 webapp/templates/chlamdb/fam.html | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/webapp/templates/chlamdb/fam.html b/webapp/templates/chlamdb/fam.html
index 36956bb62..5abf833d5 100644
--- a/webapp/templates/chlamdb/fam.html
+++ b/webapp/templates/chlamdb/fam.html
@@ -178,7 +178,7 @@ <h3 class="panel-title">Description</h3>
                         {% for key, value in info.items %}
                           <tr>
                             <th>{{key}}</th>
-                            <td>{{value}}</td>
+                            <td>{{value|safe}}</td>
                           </tr>
                         {% endfor %}
 

From a073322711d5acf31fe68392de068017ab006db9 Mon Sep 17 00:00:00 2001
From: Niklaus Johner <niklaus.johner@a3.epfl.ch>
Date: Thu, 18 Jan 2024 17:36:59 +0100
Subject: [PATCH 2/2] Represent HMM links as an extenal links.

---
 webapp/views/utils.py | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/webapp/views/utils.py b/webapp/views/utils.py
index fc813858c..9b9212925 100644
--- a/webapp/views/utils.py
+++ b/webapp/views/utils.py
@@ -136,10 +136,14 @@ def format_amr(gene, to_url=False):
     return f"<a href=\"/fam_amr/{gene}\">{gene}</a>"
 
 
+icon_external_link = '<i class="fas fa-external-link-alt"></i>'
+
+
 def format_hmm_url(hmm_id):
     if hmm_id:
         hmm_id = hmm_id.rsplit(".", 1)[0]
-        return f"<a href=\"https://www.ncbi.nlm.nih.gov/genome/annotation_prok/evidence/{hmm_id}\">{hmm_id}</a>"  # noqa
+        return f'<a href="https://www.ncbi.nlm.nih.gov/genome/annotation_prok/evidence/{hmm_id}"'\
+               f' target="_blank">{hmm_id}&nbsp{icon_external_link}</a>'  # noqa
     return hmm_id