v0.2.11

• Make GTF default output
• Add function to get SNPs from Variant attribute
• Improve PROST with last version output
• Add isomiR-SEA compatibility
• Fix sRNAbench exact match to NA in GFF
• Change stats to use only 1 level isomiR classification
• Add GFF to count matrix
• Add read_attributes function
• Improve isomiR reading from srnabench tool
• Add PROST to supported tools
• Remove deletion from addition isomiRs
• Support for srnabench output
• Fix bug mixing up source column
• Support Seqbuster output
• Functin to guess database used from GTF file through --mirna parameter
• Adapt output format to https://github.com/miRTop/incubator/blob/master/format/definition.md
• add function to check correct annotation
• add test data for SAM parsing
• add script to simulate isomiRs
• parse indels from bam file
• fix index BAM file command line
• add function to accept indels and test unit
• change header from subs -> mism to be compatible with isomiRs