Skip to content

FASTA Format

Jump to bottom
Miguel Amezola edited this page Sep 24, 2016 · 6 revisions

The accepted amino acid codes are: A ALA alanine P PRO proline B ASX aspartate or asparagine Q GLN glutamine C CYS cystine R ARG arginine D ASP aspartate S SER serine E GLU glutamate T THR threonine F PHE phenylalanine U selenocysteine G GLY glycine V VAL valine H HIS histidine W TRP tryptophan I ILE isoleucine Y TYR tyrosine K LYS lysine Z GLX glutamate or glutamine L LEU leucine X any M MET methionine * translation stop N ASN asparagine - gap of indeterminate length

References

  1. C. E. Shannon: A mathematical theory of communication. Bell System Technical Journal, vol. 27, pp. 379–423 and 623–656, July and October 1948

  2. "What Is FASTA Format?" FASTA Format. Zhang Lab, University of Michigan, n.d. Web. 24 Sept. 2016.

  3. Rost, B.; J.Liu; R.Nair; K.O. Wrzeszczynski; Y. Ofran (2003). "Automatic prediction of protein function". Cellular and Molecular Life Sciences. 60 (12): 2637–2650. doi:10.1007/s00018-003-3114-8. PMID 14685688.

  4. Alpaydin, Ethem. "Introduction to Machine Learning." MIT Press, 04 Dec. 2009. Web. 24 Sept. 2016.

  5. Nielsen, Michael. "Neural Networks and Deep Learning." Neural Networks and Deep Learning. N.p., June 2016. Web. 24 Sept. 2016.

  6. "Implementing a Neural Network from Scratch in Python – An Introduction." WildML. N.p., 10 Jan. 2016. Web. 24 Sept. 2016.

  7. "Recurrent Neural Networks Tutorial, Part 1 – Introduction to RNNs." WildML. N.p., 08 July 2016. Web. 24 Sept. 2016.

  8. Singh, Jagjit. Great Ideas in Information Theory, Language and Cybernetics. New York: Dover Publications, 1966. Print.

  9. "Structural Bioinformatics Guide: Protein Structure, Protein Sequence Analysis and Alignment, Homology Modeling." Protein Structure and Structural Bioinformatics. N.p., n.d. Web. 25 Sept. 2016.

  10. Kurzynski, M.; Chelminiak, P. Stochastic Dynamics of Proteins and the Action of Biological Molecular Machines. Entropy 2014, 16, 1969-1982.

  11. Strait, B J, and T G Dewey. “The Shannon Information Entropy of Protein Sequences.” Biophysical Journal 71.1 (1996): 148–155. Print.

  12. Heunen, Christiaan Johan Marie., Mehrnoosh Sadrzadeh, and Edward Grefenstette. Quantum Physics and Linguistics: A Compositional, Diagrammatic Discourse. Oxford, United Kingdom: Oxford UP, 2013. Print.

Clone this wiki locally