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environment.yml
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environment.yml
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name: taxonomist
channels:
- pytorch
- nvidia
- conda-forge
- defaults
dependencies:
- python=3.9
# DL
- pytorch
- torchvision
- pytorch-cuda
- lightning
- optuna
- wandb
- transformers
- huggingface_hub
- datasets
- torchmetrics
- onnx
- onnxruntime
# DS
- numpy
- scipy
- scikit-learn
- scikit-image
- pandas
- pandas-profiling
- opencv
- pillow>=6.0.0
- numba
- dask
- dask-ml
- joblib
# Plotting + viz
- matplotlib==3.7.3
- seaborn
- bokeh
- plotly
- streamlit>=1.21
- gradio
- tensorboard
# ipython + notebooks
- ipython
- notebook
- jupyterlab
- ipywidgets
- ipykernel
# Others
- tqdm
- pylint
- pytest
- ruff
- openpyxl
- pip
- pip:
- timm
- black
- albumentations
- omegaconf
- pygbif
- biopython
- networkx[default]
- bigtree
- pycocotools