CHANGELOG.md

4.2.0 - 2023-11-18

Added

• errors submodule to collect custom exceptions

Changed

• Replaced what linters I could with ruff
• Minimum Python version now 3.10 (sorry, but I wanted to be able to use structural pattern matching)
• Updated dependencies
  • Now using the typer 9.0 style Annotated cli arguments
• Fixed some of the existing type hints
  • Replacing the depreciated capitalized data types from Typing with the standard ones
• LOTS of little fixes to make ruff and sourcery happy

Removed

• Any of the if __name__ == "__main__" from submodules, since none of that crap was used
• __about__ submodule
• All of the set_target_fn crap, since everything was using set_target anyway

4.1.0

Added

• Add typing information to the azimuth.util, azimuth.featurization, and azimuth.predict, azimuth.model_comparison, module
• Adding typing with monkeytype

Changed

• Use importlib.metadata for author, email, and version in __about__.py
• Use importlib.resources instead of pkg_resources
• Changed signature for azimuth.utils.get_gene_sequence (still not sure how that is supposed to work)
• Regenerated models for scikit-learn 0.24.0
• Updated dependencies
• Moved get_data(), get_ranks(), and impute_gene_position() from azimuth.utilto theazimuth.load_data` submodule (which is the only place it is used) to remove circular imports

Removed

• get_thirty_one_mer_data, spearmanr_nonan, extract_feature_from_model, extract_feature_from_model_sum, and feature_importances from azimuth.utils as they were unused

4.0.0 - 2021-07-25

Added

• CHANGELOG.md
• Poetry for PEP517
• Add Cython as dependency

Changed

• Updated dependencies
• Replace click with typer

Fixed

• Cleaned up some argument typing