diff --git a/pyproject.toml b/pyproject.toml index 5e3a9bb..57a2d6e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "velocyto" -version = "0.30.0" +version = "0.30.1" description = "RNA velocity analysis for single cell RNA-seq data" authors = ["Linnarsson Lab "] license = "BSD-2-Clause" diff --git a/src/velocyto/commands/_run.py b/src/velocyto/commands/_run.py index ae2df52..6595ccf 100644 --- a/src/velocyto/commands/_run.py +++ b/src/velocyto/commands/_run.py @@ -219,7 +219,7 @@ def _run( # ca[key] = np.full(len(cell_bcs_order), value) # Save to loom file - outfile = outputfolder.joinpath(f"{sampleid}.loom") + outfile = outputfolder.joinpath(f"{sampleid}.h5ad") logger.debug(f"Generating output file {outfile}") # row attributes