The total presets counter still counts on subdirectories.

[OfficialIncubo]

The title says it all. The example of the image up there.
MilkDrop3 still considers to be counted on subdirectories. You can put the brackets, for example: (including subdirectories).
...or don't count when the subdirectory has read.

[milkdrop2077]

ok thanks, I'll patch this on the next update